User: SV

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SV10
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10
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New User
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Last seen:
9 months, 1 week ago
Joined:
3 years, 11 months ago
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s******@kovidbioanalytics.com

Posts by SV

<prev • 13 results • page 1 of 2 • next >
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Comment: C: Where to get tbl2asn tool's current version?
... Thanks, but I already checked that FTP link, and the Linux versions there are showing 0 Bytes. ...
written 9 months ago by SV10
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Where to get tbl2asn tool's current version?
... Hi everyone, I am trying to generate `.sqn` file for the data that I have (I have .sbt, .fsa and .tbl files) using tbl2asn tool. When I run this command `tbl2asn -i contigs.fsa -t template.sbt -j "[organism=Genus species]" -o sqn_file_trial.sqn`, it doesn't create `.sqn` file and gives me f ...
tbl2asn .sqn file generation written 9 months ago by SV10
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Comment: C: Getting an empty .fastq file as output when ran poretools command on multiple .f
... Ok, thanks! So basically for linux I would need **Installing from the tar.gz archive** file or **Installing from an .rpm file** options, where I don't have access to. Could you suggest any other option till then? ...
written 12 months ago by SV10
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Comment: C: Getting an empty .fastq file as output when ran poretools command on multiple .f
... No, I don't have access. When selected guppy for linux, it directs me to the Software Downloads page, which I don't have access to ...
written 12 months ago by SV10
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Comment: C: Getting an empty .fastq file as output when ran poretools command on multiple .f
... I am a guest member of the nanopore community. I tried to create an account but they ask to select kits for a paid account. I need only access to the tool but did not find that option in the account creation process. Can you please help? ...
written 12 months ago by SV10
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Comment: C: Getting an empty .fastq file as output when ran poretools command on multiple .f
... Ok, thanks @WouterDeCoster. I installed guppy using `pip install guppy`, it installed successfully, but when tried `guppy_basecaller --help` it says `guppy_basecaller: command not found`. Is guppy a working tool? https://pypi.org/project/guppy/ ...
written 12 months ago by SV10
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Getting an empty .fastq file as output when ran poretools command on multiple .fast5 files
... Hello everyone, I am trying to do assembly and annotation for oxford nanopore data, bacterial genome (have multiple .fast5 and fastq files with me). For this, I am referring to this link: https://angus.readthedocs.io/en/2017/analyzing_nanopore_data.html So, according to steps given I am trying ...
assembly oxford nanopore data poretools written 12 months ago by SV10
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Comment: C: How to find out human mtDNA genes in d-loop control region for Indian origin onl
... Yes, mtDNA genes based on geographical origin as Indian, but genes from the d-loop region of mtDNA. ...
written 15 months ago by SV10
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How to find out human mtDNA genes in d-loop control region for Indian origin only
... Hi everyone, I need help to find out the list of all **mtDNA genes** of **Indian origin** in the **d-loop control region** of mtDNA. I searched for databases/tools that can help me find out a list of genes, but most of the mtDNA specific databases are not working or not updated, so I don't know e ...
gene indian origin mitochondrial genes written 15 months ago by SV10 • updated 15 months ago by grant.hovhannisyan2.0k
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Comment: C: How can I get a list of reads(read IDs) from bam files and also list of regions
... Thank you @Vakul. This is also a useful source. ...
written 4.0 years ago by SV10

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