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5
votes
2
replies
1.6k
views
Answer: A: Samtools segmentation fault when extracting exons from bam file.
4.5 years ago by Damian Kao 16k
0
votes
1
reply
2.7k
views
Comment: C: Strange Depth of Coverage distribution
4.5 years ago by Damian Kao 16k
0
votes
1
reply
2.7k
views
Comment: C: Strange Depth of Coverage distribution
4.5 years ago by Damian Kao 16k
1
vote
0
replies
3.0k
views
Comment: C: Differential Expression Analysis between conditions of single cell RNA-Seq
4.6 years ago by Damian Kao 16k
1
vote
0
replies
3.8k
views
Answer: A: Tophat vs Bowtie alignment rates
4.6 years ago by Damian Kao 16k
1
vote
1
reply
1.5k
views
Comment: C: how to count the nucleotide frequency of paired ended fasta files
4.6 years ago by Damian Kao 16k
4
votes
1
reply
15k
views
Answer: A: Can We Compare Two Different Rna-Seq Experiments?
updated 4.6 years ago by 40k • written 10.5 years ago by 16k
1
vote
0
replies
19k
views
Answer: A: Scan Through Txt, Append Certain Data To An Empty List In Python
updated 4.7 years ago by 40k • written 11.6 years ago by 16k
3
votes
1
reply
1.0k
views
Answer: A: Pulling out interval adjoining regions
4.8 years ago by Damian Kao 16k
0
votes
0
replies
877
views
Comment: C: SNP calling from BAM file
4.9 years ago by Damian Kao 16k
3
votes
2
replies
9.6k
views
Answer: A: Pairwise Sequence Alignment Using Pairwise2 Module With Biopython
updated 4.9 years ago by 40k • written 11.9 years ago by 16k
0
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0
replies
2.4k
views
Answer: C: RNA-seq normalization and standardization
4.9 years ago by Damian Kao 16k
0
votes
1
reply
1.4k
views
Comment: C: Abyss run time
4.9 years ago by Damian Kao 16k
1
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0
replies
4.3k
views
Comment: C: SNPGenie: CDS does not have length that is divisible by 3
4.9 years ago by Damian Kao 16k
1
vote
0
replies
4.3k
views
Comment: C: SNPGenie: CDS does not have length that is divisible by 3
4.9 years ago by Damian Kao 16k
2
votes
1
reply
4.3k
views
Comment: C: SNPGenie: CDS does not have length that is divisible by 3
4.9 years ago by Damian Kao 16k
1
vote
0
replies
3.4k
views
Comment: C: What are the recommended methods for merging de-novo assemblies?
4.9 years ago by Damian Kao 16k
1
vote
0
replies
1.3k
views
Comment: C: Trinity ERROR during assembling extracted reads
5.0 years ago by Damian Kao 16k
0
votes
1
reply
2.7k
views
Answer: A: Where to find a valid GTF file for stringtie asssembly?
5.0 years ago by Damian Kao 16k
1
vote
1
reply
5.0k
views
Answer: A: How can I make a .bed file from my fasta?
5.0 years ago by Damian Kao 16k
1
vote
1
reply
3.4k
views
Answer: A: What are the recommended methods for merging de-novo assemblies?
5.0 years ago by Damian Kao 16k
0
votes
2
replies
1.6k
views
Best practices for variant calling on multiple sequencing runs of the same sample
variant calling snps vcf
updated 5.0 years ago by 13k • written 5.0 years ago by 16k
0
votes
0
replies
1.5k
views
Answer: A: 20-mer DNA sequence list - assess similarity
5.0 years ago by Damian Kao 16k
1
vote
0
replies
1.5k
views
Answer: A: Probability of up/downregulation occuring by chance
updated 5.0 years ago by 40k • written 7.6 years ago by 16k
0
votes
1
reply
2.6k
views
Comment: C: Pseudogenes in bacteria genome
5.1 years ago by Damian Kao 16k
43
votes
3
replies
131k
views
Answer: A: Useful Bash Commands To Handle Fasta Files
updated 5.1 years ago by 40k • written 11.6 years ago by 16k
3
votes
0
replies
9.7k
views
Answer: A: Is there consensus on what constitutes a good BUSCO score?
5.1 years ago by Damian Kao 16k
1
vote
0
replies
3.3k
views
Comment: C: covert SAM to full length fasta
5.1 years ago by Damian Kao 16k
0
votes
0
replies
13k
views
Comment: C: Is there a easy to use GATK pipeline for SNP calling?
5.1 years ago by Damian Kao 16k
1
vote
0
replies
13k
views
Comment: C: Is there a easy to use GATK pipeline for SNP calling?
5.1 years ago by Damian Kao 16k
0
votes
1
reply
1.3k
views
Answer: A: sed regex code help wanted
5.1 years ago by Damian Kao 16k
6
votes
1
reply
1.5k
views
Answer: A: What is wrong with NCBI's gff file?
5.1 years ago by Damian Kao 16k
2
votes
1
reply
1.0k
views
Answer: A: Are there any de novo assemblers which can handle (either) transcriptomic or gen
5.2 years ago by Damian Kao 16k
5
votes
0
replies
2.2k
views
Answer: A: How can I perform Differential expression analysis with just one control and one
5.2 years ago by Damian Kao 16k
3
votes
1
reply
2.9k
views
Comment: C: Jellyfish: every other kmer count is zero
5.3 years ago by Damian Kao 16k
0
votes
0
replies
4.7k
views
Comment: C: R or python, which one do you prefer in analysing scRNAseq datasets?
5.4 years ago by Damian Kao 16k
1
vote
1
reply
1.4k
views
Comment: C: pyncls not dead! The datastructure nested containment list (faster than interval
5.4 years ago by Damian Kao 16k
1
vote
1
reply
2.3k
views
Comment: C: Using rna-STAR on Amazon EC2 instance
5.4 years ago by Damian Kao 16k
0
votes
1
reply
3.6k
views
Comment: C: Hybrid assembly using MinION data + correction with Illumina. Which strategy to
5.4 years ago by Damian Kao 16k
0
votes
1
reply
2.1k
views
Comment: C: using awk to extract a specific pattern
5.4 years ago by Damian Kao 16k
1
vote
1
reply
2.1k
views
Comment: C: using awk to extract a specific pattern
5.4 years ago by Damian Kao 16k
1
vote
1
reply
2.6k
views
Answer: A: How to get the total genic and intergenic length of a chromosome?
5.4 years ago by Damian Kao 16k
6
votes
4
replies
1.9k
views
Variant calling in genomic chunks
variant calling vcf
updated 5.5 years ago by 16k • written 5.5 years ago by 16k
1
vote
0
replies
1.8k
views
Answer: A: long-range technologies for genome scaffolding
5.5 years ago by Damian Kao 16k
0
votes
0
replies
1.9k
views
Comment: C: Variant calling in genomic chunks
5.5 years ago by Damian Kao 16k
0
votes
0
replies
1.0k
views
Answer: A: Assemble genomes from different sequencing platforms
5.5 years ago by Damian Kao 16k
4
votes
3
replies
13k
views
Comment: C: Is there a easy to use GATK pipeline for SNP calling?
5.5 years ago by Damian Kao 16k
0
votes
1
reply
12k
views
Comment: C: Stringtie to DESeq2
5.5 years ago by Damian Kao 16k
2
votes
2
replies
1.7k
views
Comment: C: help in converting a table
5.5 years ago by Damian Kao 16k
0
votes
1
reply
2.4k
views
Answer: A: KEGG mapping from de novo transcriptome annotation
5.5 years ago by Damian Kao 16k
873 results • Page 2 of 18
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