User: danielle.newby

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d*************@psych.ox.ac.uk

Posts by danielle.newby

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Pathway enrichment using Kolmogorov Smirnov test
... Hi, Need some input on here for pathway enrichment using Kolmogorov–Smirnov test. I have a gene expression dataset of controls versus cases. I also have information for the sample age, gender, batch, strain etc. I put this into a linear model or limma model but the formula of the model is below ...
R kegg kolmogorov–smirnov pathway enrichment written 2.1 years ago by danielle.newby30
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Confusion over what is reference for design matrix in limma
... Hi, I need some confirmation to check I am getting this right as i have been reading examples and it is just adding to the confusion! I am doing a case versus control study for differential expression analysis using Limma package in R. My control group is "0" and my case group is "1". I am wonderin ...
R designmatrix limma written 2.1 years ago by danielle.newby30 • updated 2.1 years ago by Devon Ryan86k

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