Profile Posts Awards
Show
all questions tools blogs news tutorials forum answers comments
3
votes
4
replies
2.4k
views
I'm putting a pipeline into docker, where do I store the tar files for my dependencies, on GitHub or within the Docker image?
docker pipeline
updated 6.3 years ago by ★ 2.1k • written 6.3 years ago by ▴ 170
0
votes
1
reply
7.5k
views
Comment: C: How to split fasta by '>' into a file each containing one sequence, and have the
6.3 years ago by SaltedPork ▴ 170
0
votes
1
reply
7.5k
views
Comment: C: How to split fasta by '>' into a file each containing one sequence, and have the
6.3 years ago by SaltedPork ▴ 170
13
votes
7
replies
7.5k
views
How to split fasta by '>' into a file each containing one sequence, and have the name of that file be the ID?
fasta bash split
updated 6.3 years ago by 161k • written 6.3 years ago by ▴ 170
8
votes
4
replies
2.4k
views
How can I run lastz on multiple files using a bash loop and an associative array?
bash
updated 10 months ago by 43k • written 6.3 years ago by ▴ 170
0
votes
0
replies
2.4k
views
Comment: C: How can I run lastz on multiple files using a bash loop and an associative array
6.3 years ago by SaltedPork ▴ 170
0
votes
0
replies
3.5k
views
Comment: C: How can I split a fasta file into many files, one file for each ID line and its
6.4 years ago by SaltedPork ▴ 170
5
votes
4
replies
3.5k
views
How can I split a fasta file into many files, one file for each ID line and its sequence
fasta split
updated 6.4 years ago by 141k • written 6.4 years ago by ▴ 170
4
votes
5
replies
1.6k
views
How can I calculate coverage from the base frequencies file?
coverage basefrequency frequency
updated 6.4 years ago by 21k • written 6.4 years ago by ▴ 170
0
votes
0
replies
1.6k
views
Comment: C: How can I calculate coverage from the base frequencies file?
6.4 years ago by SaltedPork ▴ 170
0
votes
1
reply
3.1k
views
Comment: C: Printing specific sequence and ID from combined fasta file using bash commands
6.4 years ago by SaltedPork ▴ 170
1
vote
1
reply
3.1k
views
Comment: C: Printing specific sequence and ID from combined fasta file using bash commands
6.4 years ago by SaltedPork ▴ 170
15
votes
15
replies
3.1k
views
Printing specific sequence and ID from combined fasta file using bash commands
fasta bash
updated 6.4 years ago by 161k • written 6.4 years ago by ▴ 170
0
votes
2
replies
3.1k
views
Comment: C: Printing specific sequence and ID from combined fasta file using bash commands
6.4 years ago by SaltedPork ▴ 170
0
votes
0
replies
3.1k
views
Comment: C: Printing specific sequence and ID from combined fasta file using bash commands
6.4 years ago by SaltedPork ▴ 170
2
votes
2
replies
4.1k
views
How can I extract sequence from a SAM file, with coordinates
sam samtools
7.4 years ago by SaltedPork ▴ 170
1
vote
5
replies
1.7k
views
How can I assign sequence length to an ID in a FASTA file using Perl?
Perl fasta
updated 7.4 years ago by 14k • written 7.4 years ago by ▴ 170
0
votes
1
reply
1.7k
views
Comment: C: How can I assign sequence length to an ID in a FASTA file using Perl?
7.4 years ago by SaltedPork ▴ 170
0
votes
0
replies
1.7k
views
Comment: C: How can I assign sequence length to an ID in a FASTA file using Perl?
7.4 years ago by SaltedPork ▴ 170
0
votes
0
replies
2.2k
views
Comment: C: How do I extract read ID after using the Bedtools genome coverage tool?
7.4 years ago by SaltedPork ▴ 170
0
votes
1
reply
2.2k
views
Comment: C: How do I extract read ID after using the Bedtools genome coverage tool?
7.4 years ago by SaltedPork ▴ 170
0
votes
1
reply
2.2k
views
Comment: C: How do I extract read ID after using the Bedtools genome coverage tool?
7.5 years ago by SaltedPork ▴ 170
3
votes
6
replies
2.2k
views
How do I extract read ID after using the Bedtools genome coverage tool?
bedtools coverage histogram
updated 7.5 years ago by 12k • written 7.5 years ago by ▴ 170
0
votes
0
replies
1.0k
views
How can I extract sequence from the human reference that maps to end sequences from FOSMIDs?
fosmid human reference
7.5 years ago by SaltedPork ▴ 170
3
votes
1
reply
3.4k
views
How can I use Samtools to map coverage distribution?
samtools coverage distribution
7.5 years ago by SaltedPork ▴ 170
5
votes
3
replies
2.8k
views
Parsing Read ID's out of a SAM file
SAM Perl Parsing
updated 7.5 years ago by 104k • written 7.5 years ago by ▴ 170
0
votes
1
reply
9.6k
views
Comment: C: Using BWA Index and i get 5 output files, but BWA-mem asks for just 1
7.6 years ago by SaltedPork ▴ 170
0
votes
1
reply
9.6k
views
Comment: C: Using BWA Index and i get 5 output files, but BWA-mem asks for just 1
7.6 years ago by SaltedPork ▴ 170
78 results • Page 2 of 2
Content Search
Users
Tags
Badges
Help About
FAQ
Access RSS
API
Stats

Use of this site constitutes acceptance of our User Agreement and Privacy Policy.

Powered by the version 2.3.6