User: jachymb

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jachymb0
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Posts by jachymb

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Comment: C: Looking for exercises on protein structure modelling
... Something interactive is much preferred. ...
written 3 months ago by jachymb0
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Looking for exercises on protein structure modelling
... Hello, I am supposed to prepare a tutorial on protein structure modelling in a bioinformatics course. It should include homology modelling / threading exercises. Could you recommend any resources for teaching which would help me create some exercises to illustrate the basic workings of these methods ...
threading protein strucure homology modelling written 3 months ago by jachymb0 • updated 3 months ago by Bastien Hervé4.3k
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Comment: C: How to check relations in gene ontology?
... Are the relations in the database always transitive or do I have to compute the transitive closure to be sure? ...
written 21 months ago by jachymb0
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How to check relations in gene ontology?
... Hello I would like to be able to check relations between go terms in an automated manner. Assume for example I have two terms, say GO:0019900 and GO:0007050. Now I would like to be able know if for example `GO:0019900 some regulated by GO:0007050` and such. On the gene ontology web, I can search fo ...
gene reasoning go ontology written 21 months ago by jachymb0 • updated 21 months ago by Pierre Lindenbaum121k
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Boolean network models examples
... Hello, I am searching for sample Boolean network models used in various works to use as examples. I have found several in the citations by this paper: http://journals.plos.org/plosone/article?id=10.1371/journal.pone.0001672 for example. But the problem is that all the authors use different represent ...
systems biology boolean network data written 23 months ago by jachymb0 • updated 23 months ago by Spacebio180

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