Latest
Open
Jobs
Tutorials
Tags
About
FAQ
Community
Planet
New Post
Log In
New Post
Latest
Open
News
Jobs
Tutorials
Forum
Tags
Planet
Users
Log In
Sign Up
About
Profile
Posts
Awards
Show
all
questions
tools
blogs
news
tutorials
forum
answers
comments
Showing :
questions
0
votes
2
replies
262
views
Length Polymorphism using long read Nanopore
genotyping
nanopore
9 weeks ago by
pixie@bioinfo
★ 1.5k
0
votes
2
replies
409
views
Issues with Minimap2 and ONT (Nanopore)
minimap
nanopore
5 months ago by
pixie@bioinfo
★ 1.5k
1
vote
2
replies
405
views
Internal controls/ Reference Samples for Nanopore
nanopore
updated 11 months ago by
dthorbur
★ 2.6k • written 11 months ago by
pixie@bioinfo
★ 1.5k
0
votes
0
replies
325
views
Identifying Multipartite viruses (Viral Bioinformatics)
genomics
13 months ago by
pixie@bioinfo
★ 1.5k
2
votes
3
replies
929
views
Regarding using a "pseudo reference genome" for aligning short reads
genomics
11 months ago by
pixie@bioinfo
★ 1.5k
3
votes
3
replies
715
views
How to proceed after Kraken2 analysis
rnaseq
kraken
updated 14 months ago by
dthorbur
★ 2.6k • written 14 months ago by
pixie@bioinfo
★ 1.5k
31
votes
11
replies
7.2k
views
8 follow
Basics Of Systems Biology...
network
updated 18 months ago by
bryan.smith4756
• 0 • written 14.5 years ago by
pixie@bioinfo
★ 1.5k
2
votes
1
reply
708
views
Sequence statistics to report viruses (or bacteria and fungi) using Nanopore for diagnostic purpose
nanopore
updated 22 months ago by
colindaven
7.0k • written 22 months ago by
pixie@bioinfo
★ 1.5k
0
votes
1
reply
553
views
Trimming SSR (repetitive primer) sequences
genomics
updated 2.2 years ago by
GenoMax
148k • written 2.2 years ago by
pixie@bioinfo
★ 1.5k
0
votes
3
replies
840
views
Calculate distribution of reads over the reference genome
ngs
updated 2.3 years ago by
Joe
22k • written 2.3 years ago by
pixie@bioinfo
★ 1.5k
1
vote
2
replies
721
views
Identifying reliable regions of reference genomes
snp
genomics
updated 2.4 years ago by
Dave Carlson
★ 2.1k • written 2.4 years ago by
pixie@bioinfo
★ 1.5k
0
votes
3
replies
816
views
Recovering sequencing reads due to Low-Diversity Illumina Sequencing Libraries
Illumina
mini-seq
updated 2.5 years ago by
GenoMax
148k • written 2.5 years ago by
pixie@bioinfo
★ 1.5k
0
votes
0
replies
462
views
pysam fetch alignments corresponding to a taxid
pysam
samtools
2.7 years ago by
pixie@bioinfo
★ 1.5k
0
votes
2
replies
699
views
How to calculate p-value for Network Data (Cluster Detection)
network
correlation
2.8 years ago by
pixie@bioinfo
★ 1.5k
0
votes
0
replies
465
views
Diagnostic Plots for SNP quality assesment
vcf
2.9 years ago by
pixie@bioinfo
★ 1.5k
2
votes
1
reply
910
views
VCF file, calculate depth per sample
vcf
bcftools
updated 3.0 years ago by
raphael.B
▴ 520 • written 3.0 years ago by
pixie@bioinfo
★ 1.5k
0
votes
1
reply
873
views
Problem with VCF format while using "VariantAnnotation" R package
vcf
updated 3.0 years ago by
Mark
★ 1.6k • written 3.0 years ago by
pixie@bioinfo
★ 1.5k
8
votes
11
replies
7.2k
views
6 follow
Heatmap In R-Wgcna-->Error While Plotting Tom
r
heatmap
updated 3.0 years ago by
camilo
• 0 • written 11.5 years ago by
pixie@bioinfo
★ 1.5k
0
votes
0
replies
488
views
Information about Genotyping by Sequencing (GBS)
snp
updated 3.2 years ago by
GenoMax
148k • written 3.2 years ago by
pixie@bioinfo
★ 1.5k
0
votes
0
replies
700
views
Create combined CpG and non-CpG bedgraphs for DNA methylation using Bismark
methylation
3.3 years ago by
pixie@bioinfo
★ 1.5k
2
votes
2
replies
851
views
R programming: basics to challenging
R
updated 3.5 years ago by
ATpoint
86k • written 3.5 years ago by
pixie@bioinfo
★ 1.5k
0
votes
1
reply
1.5k
views
Plots for Correlation between two dataframes by row
R
updated 3.6 years ago by
Kevin Blighe
88k • written 3.6 years ago by
pixie@bioinfo
★ 1.5k
0
votes
2
replies
762
views
Ideas to represent RNA-seq expression profile (Z-scores) and the significance level at the same time
R
RNAseq
updated 3.6 years ago by
German.M.Demidov
★ 2.9k • written 3.6 years ago by
pixie@bioinfo
★ 1.5k
2
votes
9
replies
24k
views
7 follow
HISAT error: Encountered internal HISAT2 exception (#1)
RNA-Seq
updated 3.7 years ago by
HaroonPakistan
• 0 • written 7.6 years ago by
pixie@bioinfo
★ 1.5k
0
votes
1
reply
1.2k
views
Segmentation fault with HOMER
homer
HiC
updated 3.0 years ago by
Sai Prasada
• 0 • written 3.9 years ago by
pixie@bioinfo
★ 1.5k
0
votes
1
reply
617
views
P value for test for proportions and random sampling
R
4.0 years ago by
pixie@bioinfo
★ 1.5k
4
votes
3
replies
1.5k
views
Self Organizing Maps for RNA-seq data
RNA-Seq
4.2 years ago by
pixie@bioinfo
★ 1.5k
2
votes
5
replies
2.0k
views
Using Deeptool for profile plots
deeptools
4.2 years ago by
pixie@bioinfo
★ 1.5k
0
votes
0
replies
834
views
Issue with Diffreps
ChIP-Seq
4.2 years ago by
pixie@bioinfo
★ 1.5k
4
votes
2
replies
2.9k
views
Bismark: bedgraph to bigwig for DNA methylation
methylation
updated 4.2 years ago by
aconga
▴ 20 • written 4.3 years ago by
pixie@bioinfo
★ 1.5k
0
votes
0
replies
683
views
Ideas Regarding TF regulatory network
network
4.2 years ago by
pixie@bioinfo
★ 1.5k
0
votes
1
reply
1.8k
views
CUT&RUN analysis pipeline
alignment
sequencing
updated 4.3 years ago by
rpolicastro
13k • written 4.3 years ago by
pixie@bioinfo
★ 1.5k
1
vote
1
reply
865
views
Bedtools to make a bed file for promoter
bedtools
updated 4.3 years ago by
seidel
11k • written 4.3 years ago by
pixie@bioinfo
★ 1.5k
1
vote
1
reply
1.3k
views
DMR detection tools for whole genome bisulphite sequencing data in Plants
R
updated 4.3 years ago by
Gautier Richard
▴ 370 • written 4.3 years ago by
pixie@bioinfo
★ 1.5k
7
votes
6
replies
2.2k
views
Plant orthologous genes
gene
updated 4.4 years ago by
lieven.sterck
15k • written 4.4 years ago by
pixie@bioinfo
★ 1.5k
11
votes
4
replies
17k
views
Importing Network From Wgcna Into Cytoscape
cytoscape
network
updated 3.0 years ago by
pengmin.wang.1
▴ 30 • written 12.0 years ago by
pixie@bioinfo
★ 1.5k
1
vote
3
replies
1.3k
views
p value for permutation test for gene-interaction data
statistics
updated 4.5 years ago by
Nicolas Rosewick
11k • written 4.5 years ago by
pixie@bioinfo
★ 1.5k
3
votes
7
replies
4.4k
views
Statistical test for overlap
statistics
updated 4.6 years ago by
H.Hasani
▴ 990 • written 4.6 years ago by
pixie@bioinfo
★ 1.5k
3
votes
2
replies
1.9k
views
Boxplots from ChIP-seq Data
ChIP-Seq
updated 4.8 years ago by
Friederike
9.0k • written 4.8 years ago by
pixie@bioinfo
★ 1.5k
0
votes
1
reply
955
views
Heatmap using Interaction/HiCHip data
ngs
heatmap
5.0 years ago by
pixie@bioinfo
★ 1.5k
0
votes
1
reply
913
views
Finding over and under-represented interactions using HOMER
homer
hic
5.0 years ago by
pixie@bioinfo
★ 1.5k
21
votes
15
replies
4.5k
views
Functional Annotation Of Domains...
protein
updated 5.4 years ago by
Biostar
20 • written 14.4 years ago by
pixie@bioinfo
★ 1.5k
0
votes
2
replies
2.8k
views
KEGG pathway visualization AND Cytoscape
KEGG
updated 5.4 years ago by
sgoetz123
▴ 20 • written 5.4 years ago by
pixie@bioinfo
★ 1.5k
1
vote
2
replies
706
views
Intersecting regions in the genome
genome
5.8 years ago by
pixie@bioinfo
★ 1.5k
0
votes
0
replies
1.9k
views
Ideas for integrating transcriptomic data/co-expression network and genome-scale metabolic networks
RNA-Seq
pathway
5.8 years ago by
pixie@bioinfo
★ 1.5k
3
votes
6
replies
1.4k
views
Calculating correlations using data from different experimental methods for a co-expression network
RNA-Seq
pcr
5.8 years ago by
pixie@bioinfo
★ 1.5k
1
vote
2
replies
1.4k
views
Sequence alignment viewer for a custom database
sequence-alignment
MSA
database
clustal
6.0 years ago by
pixie@bioinfo
★ 1.5k
2
votes
9
replies
5.9k
views
6 follow
Regarding getting gene count tables for DeSeq from StringTie using prepDE.py
RNA-Seq
stringtie
updated 6.0 years ago by
kashifahmad750
• 0 • written 7.4 years ago by
pixie@bioinfo
★ 1.5k
0
votes
5
replies
6.7k
views
Wgcna: Exporting Network To Cytoscape For Blockwise Module Construction
r
cytoscape
network
updated 6.1 years ago by
Biostar
20 • written 11.3 years ago by
pixie@bioinfo
★ 1.5k
2
votes
4
replies
1.2k
views
Suggestion regarding DESeq design of experiment
rna-seq
updated 6.2 years ago by
grant.hovhannisyan
★ 2.6k • written 6.2 years ago by
pixie@bioinfo
★ 1.5k
109 results • Page
1 of 3
Content
Search
Users
Tags
Badges
Help
About
FAQ
Access
RSS
API
Stats
Use of this site constitutes acceptance of our
User Agreement and Privacy Policy
.
Powered by the
version 2.3.6