User: mandigene94

gravatar for mandigene94
mandigene9410
Reputation:
10
Status:
New User
Location:
Last seen:
3 months ago
Joined:
2 years, 6 months ago
Email:
a***************@gmail.com

Posts by mandigene94

<prev • 5 results • page 1 of 1 • next >
0
votes
1
answer
1.0k
views
1
answers
Comment: C: How to remove sequences from a scaffold/contig file?
... Hi Brian, Thank you very much for the suggestion - this sounds like it'll solve my problem, so I will try this out! Amanda Edit: I've just tried it out and it works great! Thanks again! ...
written 18 months ago by mandigene9410
2
votes
1
answer
1.0k
views
1
answer
How to remove sequences from a scaffold/contig file?
... Hi everyone, I've been looking around and I can't seem to find a good solution to my problem, so I will ask here, in hopes that you may have some insight (of course, if there's a better thread that I've missed, please point me in that direction). I have sequences for a few different strains of ba ...
plasmid assembly written 18 months ago by mandigene9410 • updated 18 months ago by Brian Bushnell16k
0
votes
0
answers
808
views
0
answers
[Closed] Troubles with Scaffolding Tools (scarpa and opera)
... Hi all, I'm currently trying to scaffold with my contigs from a de novo assembly and the relevant paired-end reads. I've tried two programs so far: Scarpa (http://compbio.cs.toronto.edu/hapsembler/scarpa.html) and Opera (https://sourceforge.net/projects/operasf/files/OPERA-LG%20version%202.0.3/). I ...
scaffolding written 2.5 years ago by mandigene9410
0
votes
1
answer
1.5k
views
1
answers
Comment: C: How to order contigs generated from PlasmidSPAdes
... I'm trying it right now, and it seems to be working - thank you very much for your help! ...
written 2.5 years ago by mandigene9410
1
vote
1
answer
1.5k
views
1
answer
How to order contigs generated from PlasmidSPAdes
... Hello everyone, I'm new here and I'm hoping you may have some insights into my problem (I'm sorry in advance if this is a silly question, but I'm new to bioinformatics in general). My overall goal is to align my whole genome sequence data using plasmidSPAdes to generate plasmid contigs (I'm only i ...
assembly alignment contigs written 2.5 years ago by mandigene9410 • updated 2.5 years ago by Roye Rozov90

Latest awards to mandigene94

Popular Question 18 months ago, created a question with more than 1,000 views. For How to order contigs generated from PlasmidSPAdes

Help
Access

Use of this site constitutes acceptance of our User Agreement and Privacy Policy.
Powered by Biostar version 2.3.0
Traffic: 1107 users visited in the last hour