User: kwathen-dunn

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kwathen-dunn10
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1 year, 11 months ago
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k***********@sugarresearch.com.au

Posts by kwathen-dunn

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Comment: C: Extract A Group Of Fasta Sequences From A File
... Thanks very much for this! I have made a few modifications to Eric's script so it can be easily run on different files. I have it saved as 'seq_extractor.py' on my computer: # Execute by: python seq_extractor.py readsList fastafile outputfile from Bio import SeqIO import sys ...
written 4 months ago by kwathen-dunn10
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Comment: C: converting lowercase letters to uppercase letters in fasta file
... The toupper() R function has worked well for me. I was using assembly software that ouputted in lowercase and needed to convert this to uppercase for use in downstream quality-check software. The simple R script I used was: fasta = readLines("/path-to-fasta-file/filename.fa") new = toupper( ...
written 7 months ago by kwathen-dunn10
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Comment: C: Renaming Entries In A Fasta File
... Thank you so much! Just what I was looking for. It worked a treat! ...
written 23 months ago by kwathen-dunn10

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