User: IOM

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IOM0
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Posts by IOM

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Comment: C: Illumina 450K analysis with a probe selection
... Cheers ...
written 2.7 years ago by IOM0
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Comment: C: Illumina 450K analysis with a probe selection
... Hi Andrew, Thanks very much for your response. As you say, reducing the number is not appropriate and I would expect those genes to be differentially methylated using all probes if they truly were (without the reduction), is that correct? Thanks IOM ...
written 2.7 years ago by IOM0
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Illumina 450K analysis with a probe selection
... Hi, Thanks for reading, I would like to ask you for your opinion. I would like perform a methylation analysis comparing two groups of samples with a determined number of probes/genes, not using all the probes available in the array (this gene list comes from a literature search). My questions are: ...
450k illumina methylation written 2.7 years ago by IOM0 • updated 2.7 years ago by andrew.j.skelton735.8k
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Comment: C: Error in read.table(file = file, header = header, sep = sep, quote = quote, :
... Hi, I used following lines (http://stackoverflow.com/questions/6986657/find-duplicated-rows-based-on-2-columns-in-data-frame-in-r?rq=1) dup <- data.frame(as.numeric(duplicated(data$X))) #creates df with binary var for duplicated rows colnames(dup) <- c("dup") #renames column for simplicity df ...
written 2.9 years ago by IOM0
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Comment: A: Error in read.table(file = file, header = header, sep = sep, quote = quote, :
... Thanks Devon WouterDeCoster, I will check the CSV for duplicated rows. Merry christmas IOM ...
written 2.9 years ago by IOM0
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Error in read.table(file = file, header = header, sep = sep, quote = quote, : duplicate 'row.names' are not allowed
... Hi, Thanks for reading. I have searched for the answer to this problem in many places, however I am not able of finding the right one and the error keeps popping up. I am trying to read a table that has samples (86) as columns and genes as rows(>37.000). ![enter image description here][1] I h ...
R read.table duplicate row.names written 2.9 years ago by IOM0
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Comment: C: How to change bar width and axis breaks in a 3D plot made with rgl package
... Thanks Alex, I had not seen it. Chers ...
written 3.1 years ago by IOM0
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How to change bar width and axis breaks in a 3D plot made with rgl package
... Hi, Thanks for reading. I have made a 3D plot with rgl, and I am unable to change the width of the bars, the number of breaks of an axis and how to suppress the numbering of an axis. Anyone has any idea? Please find the code attached. library(rgl) # create some data X=c(10,8,9,7,6,5,4, ...
rgl width 3d axis written 3.1 years ago by IOM0 • updated 3.1 years ago by Alex Reynolds29k
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Package in R to determine which factor values are overrepresented within a particular factor of interest
... Hi, Thanks for reading. I have performed some clustering using copy number data from SNP arrays. I would like to know if those clusters are enriched for any of the clinical data/factors the samples come with. I have made several searches for a package that performs this, but results always are rel ...
factor_enrichment snp clustering written 3.1 years ago by IOM0

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