User: avismirabilis
avismirabilis • 40
- Reputation:
- 40
- Status:
- New User
- Location:
- Last seen:
- 1 year, 3 months ago
- Joined:
- 2 years, 7 months ago
- Email:
- g**********@tamu.edu
Posts by avismirabilis
<prev
• 7 results •
page 1 of 1 •
next >
0
votes
1
answer
489
views
1
answers
... Nothing unusual regarding setup. linux server (not cluster), 80 cores with 60 TB free space, and 512Gb RAM.
I took you advice and ran the latest version of Minia- actually using the GATB pipeline. That one completed through all K's within 48 hours. Strange phenomenon was that i got better assembly ...
written 16 months ago by
avismirabilis • 40
0
votes
1
answer
489
views
1
answers
... The genome is a of a Crane species - approx 1.3Gb expected genome size. We have about 800 million reads, so I was wondering if that was the reason for how long it was taking. ...
written 16 months ago by
avismirabilis • 40
3
votes
1
answer
489
views
1
answer
... My genome assembly was running fine with 22% completed on the 'Assembly' step. It had already taken 72 hours to get here. My system had to be shutdown for some critical security updates, and I had to interrupt the Minia run. Anyway to re-start from where I aborted, or back to square one? ...
written 16 months ago by
avismirabilis • 40
• updated
16 months ago by
Rayan Chikhi • 1.4k
3
votes
18
answers
38k
views
18
answers
... Congratulations @Istvan. About to buy the handbook. Looking forward to having this on my desktop! ...
written 2.5 years ago by
avismirabilis • 40
0
votes
0
answers
749
views
0
answers
... I cannot really find a good answer to this question anywhere (eg. in the manuals of microbiota analysis software): Let say I have a study comparing the microbiota of two treatment groups. I have 5 replicates for each treatment group. Other than performing ANOVA type analyses where you can define tre ...
written 2.6 years ago by
avismirabilis • 40
• updated
2.4 years ago by
Biostar ♦♦ 20
0
votes
0
answers
973
views
0
answers
... I am working with a de novo genome assembly with thousands of scaffolds. This assembly is not close to have some of the scaffolds localized to chromosomes. One of the problems I have noticed is that two SNPs that are next to each other on a scaffold, for example, are not actually from the same chrom ...
written 2.6 years ago by
avismirabilis • 40
1
vote
1
answer
4.2k
views
1
answers
Comment:
C: Pat Schloss of Mothur uses this
... Its been on and off for a few days. I was able to access wiki once on Friday, and mostly off otherwise ...
written 2.6 years ago by
avismirabilis • 40
Latest awards to avismirabilis
Commentator
2.5 years ago,
created a comment with at least 3 up-votes.
For A: The Biostar Handbook, a bioinformatics e-book for beginners
Use of this site constitutes acceptance of our User
Agreement
and Privacy
Policy.
Powered by Biostar
version 2.3.0
Traffic: 1474 users visited in the last hour