User: avismirabilis
avismirabilis • 40
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- 2 years, 7 months ago
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Posts by avismirabilis
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... Nothing unusual regarding setup. linux server (not cluster), 80 cores with 60 TB free space, and 512Gb RAM.
I took you advice and ran the latest version of Minia- actually using the GATB pipeline. That one completed through all K's within 48 hours. Strange phenomenon was that i got better assembly ...
written 2.7 years ago by
avismirabilis • 40
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... The genome is a of a Crane species - approx 1.3Gb expected genome size. We have about 800 million reads, so I was wondering if that was the reason for how long it was taking. ...
written 2.7 years ago by
avismirabilis • 40
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... My genome assembly was running fine with 22% completed on the 'Assembly' step. It had already taken 72 hours to get here. My system had to be shutdown for some critical security updates, and I had to interrupt the Minia run. Anyway to re-start from where I aborted, or back to square one? ...
written 2.7 years ago by
avismirabilis • 40
• updated
2.7 years ago by
Rayan Chikhi • 1.4k
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... Congratulations @Istvan. About to buy the handbook. Looking forward to having this on my desktop! ...
written 3.9 years ago by
avismirabilis • 40
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... I cannot really find a good answer to this question anywhere (eg. in the manuals of microbiota analysis software): Let say I have a study comparing the microbiota of two treatment groups. I have 5 replicates for each treatment group. Other than performing ANOVA type analyses where you can define tre ...
written 3.9 years ago by
avismirabilis • 40
• updated
3.8 years ago by
Biostar ♦♦ 20
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... I am working with a de novo genome assembly with thousands of scaffolds. This assembly is not close to have some of the scaffolds localized to chromosomes. One of the problems I have noticed is that two SNPs that are next to each other on a scaffold, for example, are not actually from the same chrom ...
written 4.0 years ago by
avismirabilis • 40
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Comment:
C: Pat Schloss of Mothur uses this
... Its been on and off for a few days. I was able to access wiki once on Friday, and mostly off otherwise ...
written 4.0 years ago by
avismirabilis • 40
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For A: The Biostar Handbook, a bioinformatics e-book for beginners
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