User: Lionel12

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Lionel120
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Posts by Lionel12

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Scanning fungal genomes for conserved TF binding sites.
... Greetings all, I'm new to bioinformatics and I have a question. I have a known transcription factor binding site, it has a consensus sequence which varies slightly between different species of fungi, but the core 5 nucleotides remain the same. I have tried scanning genomes for this sequence, but i ...
genome tf sequence binding site fungi written 12 months ago by Lionel120
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Separating mixed bacterial 16S RNA sequences from eukaryotic 18S ITS sequences?
... A bit of back ground - I have been given thousands of reads in FASTQ format containing sequences (16S and 18S ITS) sequenced by ILLUMINA. The adapter indices have already been removed. The plan is to separate bacterial and fungal sequences and then BLAST them to determine community composition. Al ...
bioinformatics 16s its sequencing written 2.1 years ago by Lionel120

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