User: TS

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TS30
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3 years ago
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3 years, 7 months ago
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Posts by TS

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Similar projects to GTEx
... Dear biostars forum, I want to examine differentially expressed genes in groups of samples of prostate adenocarcinoma. As a comparison reference of differentially expressed genes in healthy prostate tissue I found the [GTEx project][1]. Now my question: are there other, similar projects like the G ...
genome rna-seq human written 3.2 years ago by TS30
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Forum: First steps in bioinformatician career
... Dear biostars forum, because in this forum are a lot of qualified people with a lot of working world experience in the field of bioinformatics I want to ask specific question: I recently recieved my B.Sc. in bioinformatics and now started my M.Sc., also in bioinformatics. Additionally to that I wa ...
bioinformatics forum written 3.4 years ago by TS30 • updated 3.4 years ago by php47650
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Antibiotic targets in bacteria
... Dear biostars forum, I am currently analysing the effects of various antibiotic treatments on E. coli. The different E. coli were separatly treated with e.g. cephalosporines, aminoglycosides, tetracyclines etc. Does somebody know a database where this kind of analysis is published to distinguish t ...
gene database antibiotic e. coli written 3.5 years ago by TS30 • updated 3.5 years ago by dago2.6k
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Function createTissueSpecificModel from Cobra Toolbox with E.coli model iJO1366
... Dear biostars forum, I have a question I already asked in the cobra toolbox google group but I didn't get an answer, so I try it here now. I am trying to use the Cobra toolbox function `createTissueSpecificModel` [(see here)][1] with the E.coli model [iJO1366][2]. My goal is to get create differen ...
cobra toolbox createtissuespecificmodel ijo1366 written 3.5 years ago by TS30
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Comment: C: Question about Agilent microarray data measurement
... Sorry for my mistake, I updated my post ...
written 3.6 years ago by TS30
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Question about Agilent microarray data measurement
... Dear biostars forum, I need help with getting the data I want from agilent microarrays from [GEO database GSE59408][1]. I used the Bioconductor package ["limma"][2] to read in the data from the single-color Agilent microarrays and then the package [SCAN.UPC][3] to get the UPC values of the data. I ...
agilent limma scan.upc microarray written 3.6 years ago by TS30
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Question about differences between microarray technologies
... Hello biostars forum, I am new to this field of microarrays and biostatistics so my questions will surely sound clueless although I already tried to find solutions to my problem in this forum and on the internet. I hope you guys will still help me solving this. For my studies I need to analyse two ...
agilent affymetrix written 3.6 years ago by TS30

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