User: khalid.belkhir

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Posts by khalid.belkhir

<prev • 3 results • page 1 of 1 • next >
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Answer: A: Copy number variation data for population structure analysis
... Maybe this can help : Schrider, DR, Hahn, MW, and Begun, DJ. (2016) Parallel Evolution of Copy-Number Variation Across Continents in Drosophila melanogaster. Molecular Biology and Evolution. 33: 1308-1316. And their scripts : https://github.com/andrewkern/poolDiffCNV ...
written 5 weeks ago by khalid.belkhir30
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Answer: A: Awk or Shell script in need
... AWK has arrays for storing groups of related strings or numbers. Just use it this way : awk '{tab[$1]=tab[$1]"\n"$2" "$3" "$4} END {for (i in tab) {print i " " tab[i]} }' test.txt For each identifier in column $1 create an entry in the array (tab) if absent or concatenate its content to colum ...
written 4.0 years ago by khalid.belkhir30 • updated 4.0 years ago by genomax91k
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Answer: A: How to identify bowtie2 unique mapping using sam flag value?
... Among the optional fields reported by bowtie2 you have : XS:i: aln score for next best aln (only reported if >1 aln found) So the absence of this field for a read (in addition to the mapping flag and MAPQ) can be a sign of uniqueness ? ...
written 4.0 years ago by khalid.belkhir30

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