User: said3427

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said342790
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Mexico
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3 years, 2 months ago
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Posts by said3427

<prev • 13 results • page 1 of 2 • next >
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Answer: A: Convert "minfi::RGChannelSet" class from OLD to NEW
... ``` updateObject(data) ``` ...
written 3 days ago by said342790
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Comment: C: Low fragment assignment RNAseq
... You are right, I have contamination ...
written 19 months ago by said342790
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Low fragment assignment RNAseq
... Hello, I have RNAseq data (2x76 bp) from Mouse, the objective of the study is to run a standard differential analysis. After adapter and quality trimming using Trim_galore, I aligned the reads using HISAT2 v2.1.0 hisat2index="/mnt/b/references/grcm38_snp_tran/genome_snp_tran" hisat2 -q - ...
rna-seq written 19 months ago by said342790
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Answer: A: Error in quantro function
... Late response, but I just got the same error. You have to remove rows containing NaNs Try: qtest <- quantro(object = MetDataset[complete.cases(MetDataset),], groupFactor = Status$Status) ...
written 21 months ago by said342790
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Comment: C: Sequence duplication levels-RNA Seq
... > In RNA-Seq libraries sequences from different transcripts will be present at wildly different levels in the starting population. In order to be able to observe lowly expressed transcripts it is therefore common to greatly over sequence high expressed transcripts, and this will potentially creat ...
written 21 months ago by said342790
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Answer: A: What's the difference between 'clipping' and 'unmapped' and 'skipped'?
... `36S76M` means 36 nucleotides are soft-clipped (nts that are not part of the alignment but present in the read) + 76 alignment matches. ...
written 21 months ago by said342790
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Answer: A: BWA error [bns_restore_core] Parse error reading
... `sed -i 's/\s*$//g' db/contaminants` `bwa index db/contaminants` ...
written 22 months ago by said342790
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Answer: A: [Python] reads from fastq file
... from Bio import SeqIO SeqIO.convert('myfile.fastq','fastq','myoutput.fasta','fasta') ...
written 22 months ago by said342790
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Comment: C: Bundle file for mouse
... https://www.biostars.org/p/84501/#84582 ...
written 22 months ago by said342790
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Answer: A: How to order columns of heatmap as they are in matrix data
... Heatmap(matrix_data, cluster_columns = FALSE) ...
written 2.1 years ago by said342790

Latest awards to said3427

Supporter 22 months ago, voted at least 25 times.
Teacher 22 months ago, created an answer with at least 3 up-votes. For A: [Python] reads from fastq file

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