User: said3427

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said342790
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Location:
Mexico
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2 months, 3 weeks ago
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3 years, 10 months ago
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Posts by said3427

<prev • 13 results • page 1 of 2 • next >
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Answer: A: Convert "minfi::RGChannelSet" class from OLD to NEW
... ``` updateObject(data) ``` ...
written 8 months ago by said342790
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Comment: C: Low fragment assignment RNAseq
... You are right, I have contamination ...
written 2.3 years ago by said342790
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Low fragment assignment RNAseq
... Hello, I have RNAseq data (2x76 bp) from Mouse, the objective of the study is to run a standard differential analysis. After adapter and quality trimming using Trim_galore, I aligned the reads using HISAT2 v2.1.0 hisat2index="/mnt/b/references/grcm38_snp_tran/genome_snp_tran" hisat2 -q - ...
rna-seq written 2.3 years ago by said342790
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Answer: A: Error in quantro function
... Late response, but I just got the same error. You have to remove rows containing NaNs Try: qtest <- quantro(object = MetDataset[complete.cases(MetDataset),], groupFactor = Status$Status) ...
written 2.4 years ago by said342790
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Comment: C: Sequence duplication levels-RNA Seq
... > In RNA-Seq libraries sequences from different transcripts will be present at wildly different levels in the starting population. In order to be able to observe lowly expressed transcripts it is therefore common to greatly over sequence high expressed transcripts, and this will potentially creat ...
written 2.5 years ago by said342790
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Answer: A: What's the difference between 'clipping' and 'unmapped' and 'skipped'?
... `36S76M` means 36 nucleotides are soft-clipped (nts that are not part of the alignment but present in the read) + 76 alignment matches. ...
written 2.5 years ago by said342790
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Answer: A: BWA error [bns_restore_core] Parse error reading
... `sed -i 's/\s*$//g' db/contaminants` `bwa index db/contaminants` ...
written 2.5 years ago by said342790
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Answer: A: [Python] reads from fastq file
... from Bio import SeqIO SeqIO.convert('myfile.fastq','fastq','myoutput.fasta','fasta') ...
written 2.6 years ago by said342790
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Comment: C: Bundle file for mouse
... https://www.biostars.org/p/84501/#84582 ...
written 2.6 years ago by said342790
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Answer: A: How to order columns of heatmap as they are in matrix data
... Heatmap(matrix_data, cluster_columns = FALSE) ...
written 2.8 years ago by said342790

Latest awards to said3427

Supporter 2.5 years ago, voted at least 25 times.
Teacher 2.6 years ago, created an answer with at least 3 up-votes. For A: [Python] reads from fastq file

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