User: shangqianwang

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Posts by shangqianwang

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Comment: A: Run STAR with 4 fastq files, ERROR
... Of course! Thank you so much ...
written 2.2 years ago by shangqianwang0
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Comment: C: Run STAR with 4 fastq files, ERROR
... It works. Thank you so much and happy new year! ...
written 2.2 years ago by shangqianwang0
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Run STAR with 4 fastq files, ERROR
... I recently have a problem when I run STAR for the RNAseq alignment. I have 4 fastq files, when I put all into the script and the program indicates like"EXITING: because of fatal INPUT ERROR: number of input files for mate1: 4 is not equal to that for mate2: 1 Make sure that the number of files in -- ...
rna-seq written 2.2 years ago by shangqianwang0
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How should I generate gene names after Cuffnorm in the RNA seq pipeline?
... I use STAR to align the fastq file to generate the BAM, followed by Cuffquant, Cuffnorm to get fpkm table. But in that table, only ENSG symbol is listed. How should I know my gene names? ...
rna-seq written 2.2 years ago by shangqianwang0 • updated 2.0 years ago by blackgore60
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Comment: C: How can I open .fusion file for fusion detection from RNA-seq analysis
... Perfectly solved! Thank you Dan! ...
written 2.3 years ago by shangqianwang0
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How can I open .fusion file for fusion detection from RNA-seq analysis
... I use STAR to detect the fusions from RNA-seq file, then I got .FUSION file, how can I open it? ...
rna-seq written 2.3 years ago by shangqianwang0
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Comment: C: How to generate .BED file from Partek GS using SNP6 copy number array data?
... I am sorry, my mistype. It should be the .seg file to import into the IGV. I called the technical support, they said don't know. ...
written 2.4 years ago by shangqianwang0
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How to generate .BED file from Partek GS using SNP6 copy number array data?
... Hi everyone Recently we did several of our cell lines for SNP6 affymetrix CNA. We want to visualize in IGV to distinguish which cell line is not derived from the previous organ or obviously different from the other cell lines. How can we generate .BED file from Partek GS? Do I need to use the segme ...
sequence snp written 2.4 years ago by shangqianwang0 • updated 2.4 years ago by Partek Technical Support0

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