User: wl284

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wl28440
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40
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New User
Location:
UK
Last seen:
11 months, 3 weeks ago
Joined:
2 years, 8 months ago
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w*************@live.co.uk

Posts by wl284

<prev • 19 results • page 1 of 2 • next >
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Comment: C: Figtree - Make branches the same colour as their tip labels
... OK, no problem, I'll stick to writing my posts in a more formal style/tone in future to avoid misinterpretation. ...
written 11 months ago by wl28440
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Comment: C: Figtree - Make branches the same colour as their tip labels
... Thanks for the information, sorry the information I provided was unclear. I was trying to keep it as simple as I could to try not to confuse people but seems like it had the opposite effect. I'll try to look into code-based solutions as you suggest. ...
written 11 months ago by wl28440
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Comment: C: Figtree - Make branches the same colour as their tip labels
... I did state that there were a large number of sequences in my original post, which I thought was sufficient, but have now clarified this to state more than 1000. Apologies for wasting your time jrj.healey. Also, I didn’t mean to cause offense regarding the scripting. All I meant was that I’m not ver ...
written 11 months ago by wl28440
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Comment: C: Figtree - Make branches the same colour as their tip labels
... OK thanks, I'll take a look ...
written 11 months ago by wl28440
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Comment: C: Figtree - Make branches the same colour as their tip labels
... Also, it's the branches themselves that I would like to colour, not the branch labels. Cheers ...
written 11 months ago by wl28440
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Comment: C: Figtree - Make branches the same colour as their tip labels
... OK, cool, could you maybe expand on this a bit, perhaps explain how I would do this for the example in my question? ...
written 11 months ago by wl28440
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Comment: C: Figtree - Make branches the same colour as their tip labels
... Thanks for taking the time to reply. I am aware of how to colour branches using the process you describe, however I have more than 1000 sequences in my tree, and colouring each branch manually would take a very long time and would also need repeating each time I make a new version of the tree, so un ...
written 11 months ago by wl28440
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Figtree - Make branches the same colour as their tip labels
... I have a tree with more than 1000 sequences. I want to colour branches based on a string in the tip labels. For example, all the branches leading to tip labels that have the word 'bacteria' in, I want to label blue, and those with the word 'archaea' I want to label red. It is straight forward to d ...
phylogeny tree figtree written 11 months ago by wl28440
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Comment: C: is there a tblastn-version of hmmsearch i.e. search protein profile against nucl
... Yes, I'm referring to the hmmsearch within the HMMER package. I'll update my question to be more specific. ...
written 2.2 years ago by wl28440
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is there a tblastn-version of hmmsearch i.e. search protein profile against nucleotide database?
... I'm trying to look for some mitochondrial genes that could be highly divergent in a genomic assembly using a hmm profile of translated genes from other organisms. Normally I use hmmbuild to make a profile and hmmsearch (both from HMMER) to search a database of protein sequences but I was wondering ...
sequence blast written 2.2 years ago by wl28440

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