User: zwfanwz678

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zwfanwz67810
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Posts by zwfanwz678

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how many columns does F-seq need in the bed file
... recently, I using F-seq to run some DNase-seq data. I know F-seq need bed file as input, so I merged my paired end sequence and got a bed file contain 5 column like below: chr10 29334602 29334656 SRR891270.293 255 chr10 61751512 61751575 SRR891270.256 255 chr10 103211892 ...
f-seq callpeaks chip-seq peakcalling dnase-seq written 17 months ago by zwfanwz67810 • updated 17 months ago by spacemorrissey200
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Comment: C: Does strand information still exist after reads merging?
... thanks for you answer. ...
written 17 months ago by zwfanwz67810
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Does strand information still exist after reads merging?
... hello everyone! I encountered a question and do not know how to tackle with it. I have some reads(using bedtools bamtobed function) like this ---------- chr10 29334602 29334652 SRR891270.293/2 255 + chr10 29334606 29334656 SRR891270.293/1 255 - chr10 61751512 61751562 SRR89 ...
chip-seq written 17 months ago by zwfanwz67810 • updated 17 months ago by Devon Ryan86k
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Average PhastCon score using bedops
... I want to uss bedops to some peaks' average phastCon score, and I followed this https://www.biostars.org/p/129981/ But when I use sort-bed to sort my bedfile, it report an error "Non-numeric end coordinate", I don't know what's wrong.my bed file is as follows(no header, just chr1). chr1 846692 846 ...
software error bedops starch written 2.1 years ago by zwfanwz67810 • updated 7 months ago by Biostar ♦♦ 20

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