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Answer: Answer: Is there a way to use CNVkit without a reference from normal samples?
6 months ago by Matteo Schiavinato ★ 3.6k
2
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0
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586
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Answer: A: how can I the unwanted fasta sequences?
3.4 years ago by Matteo Schiavinato ★ 3.6k
1
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1
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15k
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Answer: A: DESeq2: "model matrix is not full rank"
3.4 years ago by Matteo Schiavinato ★ 3.6k
4
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1
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3.8k
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Answer: A: python calculation of protein multiple sequence alignment
3.6 years ago by Matteo Schiavinato ★ 3.6k
1
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1
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3.4k
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Answer: A: Filtering low quality score bases from BAM file
3.6 years ago by Matteo Schiavinato ★ 3.6k
1
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1
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2.1k
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Answer: A: RPKM and TPM when operating with small group of genes: is there a bias?
3.6 years ago by Matteo Schiavinato ★ 3.6k
2
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1
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1.5k
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Answer: A: Extract allele read counts for heterozygous positions in VCF
4.5 years ago by Matteo Schiavinato ★ 3.6k
1
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1
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4.8k
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Answer: A: cutoff for expressed genes in DESeq2
4.5 years ago by Matteo Schiavinato ★ 3.6k
9
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1
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9.4k
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Answer: A: Remove part of headers in FASTA file
4.5 years ago by Matteo Schiavinato ★ 3.6k
1
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0
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6.4k
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Answer: A: TPM or FPKM for single cell RNA seq experiment ?
4.5 years ago by Matteo Schiavinato ★ 3.6k
0
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1
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2.2k
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Answer: A: Losing reads from bam to fastq
4.5 years ago by Matteo Schiavinato ★ 3.6k
1
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0
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3.4k
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Answer: A: Split multi fasta based on line header
4.7 years ago by Matteo Schiavinato ★ 3.6k
0
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0
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540
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Answer: A: Where I can download index files for Rousettus aegyptiacus?
4.7 years ago by Matteo Schiavinato ★ 3.6k
1
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0
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3.1k
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Answer: A: How to annotate FASTA genome using GFF genes from another genome?
4.7 years ago by Matteo Schiavinato ★ 3.6k
1
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1
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2.2k
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Answer: A: Extracting divergence times from 4DTv
5.2 years ago by Matteo Schiavinato ★ 3.6k
2
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1
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3.2k
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Answer: A: Trimmomatic: LEADING and TRAILING
5.3 years ago by Matteo Schiavinato ★ 3.6k
1
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0
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3.0k
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Answer: A: SplitsTree command line mode
5.5 years ago by Matteo Schiavinato ★ 3.6k
0
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0
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5.2k
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Answer: A: how specify feature type in featureCounts
5.5 years ago by Matteo Schiavinato ★ 3.6k
3
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1
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3.2k
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Answer: A: Problems running VC GATK: SAM/BAM/CRAM file dedup.bam is malformed
5.6 years ago by Matteo Schiavinato ★ 3.6k
1
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1
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2.0k
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Answer: A: Getting a distinct set of Gene Ontology terms
5.6 years ago by Matteo Schiavinato ★ 3.6k
2
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1
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3.7k
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Answer: A: building index with HISAT2
6.0 years ago by Matteo Schiavinato ★ 3.6k
0
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1
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2.1k
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Answer: A: strange htseq-count result
6.0 years ago by Matteo Schiavinato ★ 3.6k
0
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0
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1.8k
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Answer: A: Gene Prediction Softwares
6.2 years ago by Matteo Schiavinato ★ 3.6k
2
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1
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3.2k
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Answer: A: Sensitive (BLAST like) and fast alignment of millions of sequences against human
6.2 years ago by Matteo Schiavinato ★ 3.6k
1
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1
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4.1k
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Answer: A: Differential gene expression from RNAseq data. Before or after annotation?
6.2 years ago by Matteo Schiavinato ★ 3.6k
1
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0
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3.0k
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Answer: A: Estimating percentage of overlap bewteen sam/bam/bed files
6.2 years ago by Matteo Schiavinato ★ 3.6k
1
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0
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1.6k
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Answer: A: Best method to assemble low-abundance transcripts?
6.2 years ago by Matteo Schiavinato ★ 3.6k
1
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1
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2.0k
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Answer: A: Genome DNA sequence pattern matching
6.2 years ago by Matteo Schiavinato ★ 3.6k
2
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0
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1.8k
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Answer: A: Calculating gene/exon coverage
6.2 years ago by Matteo Schiavinato ★ 3.6k
1
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0
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4.2k
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Answer: A: Which tool is best for Annotation of human vcf files (Snpeff or VEP or Annovar)
6.2 years ago by Matteo Schiavinato ★ 3.6k
1
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1
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3.5k
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Answer: A: error in execution of Trimmomatic 0.36
6.2 years ago by Matteo Schiavinato ★ 3.6k
5
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1
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1.6k
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Answer: A: Explanation of a Perl script
6.2 years ago by Matteo Schiavinato ★ 3.6k
1
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0
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904
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Answer: A: Coverage of 320; Would it be useful to perform very stringent filtering?
6.2 years ago by Matteo Schiavinato ★ 3.6k
2
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0
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1.8k
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Answer: A: How to fetch those line having only similar characters.
6.2 years ago by Matteo Schiavinato ★ 3.6k
4
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0
replies
3.6k
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Answer: A: How to remove split/broken reads from bam file
6.2 years ago by Matteo Schiavinato ★ 3.6k
0
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0
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2.8k
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Answer: A: paired-end read: background + practical question - Strainphlan pipeline
6.2 years ago by Matteo Schiavinato ★ 3.6k
1
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0
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2.0k
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Answer: A: Cufflinks gives only CUFF names with a gtf.
6.2 years ago by Matteo Schiavinato ★ 3.6k
2
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0
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5.7k
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Answer: A: Building RNAseq pipeline STAR-RSEM-tximport-DESeq2
6.2 years ago by Matteo Schiavinato ★ 3.6k
5
votes
2
replies
6.4k
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Answer: A: How to select uniquely and concordantly reads from hisat2 alingment for raw read
6.2 years ago by Matteo Schiavinato ★ 3.6k
2
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2
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1.7k
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Answer: A: Sub_sampling Paired_end reads in Fastq.gz format.
6.3 years ago by Matteo Schiavinato ★ 3.6k
2
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2
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2.0k
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Answer: A: Which aligment tool is best for eukaryotic transcriptome?
6.3 years ago by Matteo Schiavinato ★ 3.6k
0
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1
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4.1k
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Answer: A: Parse FASTQC data
6.3 years ago by Matteo Schiavinato ★ 3.6k
2
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1
reply
2.4k
views
Answer: C: SOAP aligner removes samfile headers
6.3 years ago by Matteo Schiavinato ★ 3.6k
0
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1
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4.2k
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Answer: A: Calculate TPM from cuffnorm count data
6.3 years ago by Matteo Schiavinato ★ 3.6k
2
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1
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7.3k
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Answer: A: bwa mem has more MAPQ values as 0 and 60
6.3 years ago by Matteo Schiavinato ★ 3.6k
0
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0
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4.8k
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Answer: A: Cutoff for TPM value
6.3 years ago by Matteo Schiavinato ★ 3.6k
1
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1
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3.8k
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Answer: A: Mismatch issue in bwa
6.3 years ago by Matteo Schiavinato ★ 3.6k
4
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0
replies
10k
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Answer: A: Hard vs soft masked references while aligning with STAR
6.3 years ago by Matteo Schiavinato ★ 3.6k
0
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1
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3.9k
views
Answer: A: Chimeric alignment with minimap2
6.3 years ago by Matteo Schiavinato ★ 3.6k
2
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1
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1.2k
views
Answer: A: Same transcript appear on different scaffolds. Why?
6.3 years ago by Matteo Schiavinato ★ 3.6k
125 results • Page 1 of 3
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