Profile Posts Awards
Show
all questions tools blogs news tutorials forum answers comments
0
votes
1
reply
2.3k
views
Comment: C: Trimmomatic; How to get only q20 < q < q30 reads
4.5 years ago by Matteo Schiavinato ★ 3.6k
0
votes
1
reply
2.3k
views
Comment: C: Trimmomatic; How to get only q20 < q < q30 reads
4.5 years ago by Matteo Schiavinato ★ 3.6k
1
vote
0
replies
4.8k
views
Comment: C: cutoff for expressed genes in DESeq2
4.5 years ago by Matteo Schiavinato ★ 3.6k
1
vote
1
reply
4.8k
views
Answer: A: cutoff for expressed genes in DESeq2
4.5 years ago by Matteo Schiavinato ★ 3.6k
0
votes
0
replies
9.4k
views
Comment: C: Remove part of headers in FASTA file
4.5 years ago by Matteo Schiavinato ★ 3.6k
9
votes
1
reply
9.4k
views
Answer: A: Remove part of headers in FASTA file
4.5 years ago by Matteo Schiavinato ★ 3.6k
2
votes
0
replies
9.4k
views
Comment: C: Remove part of headers in FASTA file
4.5 years ago by Matteo Schiavinato ★ 3.6k
1
vote
0
replies
6.4k
views
Answer: A: TPM or FPKM for single cell RNA seq experiment ?
4.5 years ago by Matteo Schiavinato ★ 3.6k
0
votes
0
replies
2.2k
views
Comment: C: Losing reads from bam to fastq
4.5 years ago by Matteo Schiavinato ★ 3.6k
0
votes
0
replies
2.0k
views
Comment: C: Pipe pysam.view() output to pysam.sort()
4.5 years ago by Matteo Schiavinato ★ 3.6k
1
vote
3
replies
2.0k
views
Pipe pysam.view() output to pysam.sort()
pysam sam alignment python sort
updated 4.5 years ago by ★ 2.2k • written 4.5 years ago by ★ 3.6k
0
votes
1
reply
2.2k
views
Answer: A: Losing reads from bam to fastq
4.5 years ago by Matteo Schiavinato ★ 3.6k
1
vote
2
replies
2.2k
views
Extracting divergence times from 4DTv
variants divergence time 4DTv substitution
updated 4.5 years ago by 20 • written 5.4 years ago by ★ 3.6k
1
vote
0
replies
3.6k
views
Comment: C: snpEff installation, unable to download reference genome
4.6 years ago by Matteo Schiavinato ★ 3.6k
0
votes
0
replies
623
views
Are GD format files (gdtools) 0-based?
genomediff
updated 13 months ago by 43k • written 4.6 years ago by ★ 3.6k
0
votes
0
replies
2.2k
views
Comment: C: Assembler MaSuRCA (v 3.3.3) installation error
4.7 years ago by Matteo Schiavinato ★ 3.6k
1
vote
0
replies
3.4k
views
Answer: A: Split multi fasta based on line header
4.7 years ago by Matteo Schiavinato ★ 3.6k
0
votes
0
replies
540
views
Answer: A: Where I can download index files for Rousettus aegyptiacus?
4.7 years ago by Matteo Schiavinato ★ 3.6k
0
votes
1
reply
2.2k
views
Comment: C: Assembler MaSuRCA (v 3.3.3) installation error
4.7 years ago by Matteo Schiavinato ★ 3.6k
1
vote
11
replies
3.1k
views
How to annotate FASTA genome using GFF genes from another genome?
FASTA GFF annotation program genome
4.7 years ago by Matteo Schiavinato ★ 3.6k
1
vote
0
replies
3.1k
views
Answer: A: How to annotate FASTA genome using GFF genes from another genome?
4.7 years ago by Matteo Schiavinato ★ 3.6k
0
votes
0
replies
3.1k
views
Comment: C: How to annotate FASTA genome using GFF genes from another genome?
4.8 years ago by Matteo Schiavinato ★ 3.6k
0
votes
1
reply
3.1k
views
Comment: C: How to annotate FASTA genome using GFF genes from another genome?
4.8 years ago by Matteo Schiavinato ★ 3.6k
0
votes
0
replies
3.1k
views
Comment: C: How to annotate FASTA genome using GFF genes from another genome?
4.8 years ago by Matteo Schiavinato ★ 3.6k
0
votes
2
replies
3.1k
views
Comment: C: How to annotate FASTA genome using GFF genes from another genome?
4.8 years ago by Matteo Schiavinato ★ 3.6k
0
votes
0
replies
1.8k
views
Comment: C: RepeatModeler - FastaDB error
4.9 years ago by Matteo Schiavinato ★ 3.6k
2
votes
2
replies
1.8k
views
Read position bias (RPB and PV4) fields from samtools mpileup: how to get them?
mpileup variant SNP call RPB
updated 4.9 years ago by ▴ 50 • written 5.9 years ago by ★ 3.6k
9
votes
5
replies
4.3k
views
CIGAR operations performed according to strand or to read?
read sequencing cigar sam format
updated 5.0 years ago by • 0 • written 6.3 years ago by ★ 3.6k
1
vote
0
replies
7.9k
views
Comment: C: Interpretation of Trimmomatic Results after Paired-End Adapter Trimming
5.1 years ago by Matteo Schiavinato ★ 3.6k
0
votes
0
replies
2.2k
views
Comment: C: Bowtie2 mapped just 50% of the reads
5.2 years ago by Matteo Schiavinato ★ 3.6k
1
vote
1
reply
2.2k
views
Answer: A: Extracting divergence times from 4DTv
5.2 years ago by Matteo Schiavinato ★ 3.6k
2
votes
0
replies
3.2k
views
Comment: C: Trimmomatic: LEADING and TRAILING
5.3 years ago by Matteo Schiavinato ★ 3.6k
2
votes
1
reply
3.2k
views
Answer: A: Trimmomatic: LEADING and TRAILING
5.3 years ago by Matteo Schiavinato ★ 3.6k
0
votes
1
reply
2.6k
views
Comment: C: ETE3 TreeError: 'Nodes are not connected!': how to fix?
5.3 years ago by Matteo Schiavinato ★ 3.6k
0
votes
1
reply
2.6k
views
Comment: C: ETE3 TreeError: 'Nodes are not connected!': how to fix?
5.3 years ago by Matteo Schiavinato ★ 3.6k
0
votes
6
replies
2.6k
views
ETE3 TreeError: 'Nodes are not connected!': how to fix?
ETE phylome phylogenetics nodes TreeError
5.3 years ago by Matteo Schiavinato ★ 3.6k
1
vote
0
replies
3.5k
views
Comment: C: How to calculate 4DTv distance (D4DTv) that stands for fourfold synonymous thir
5.4 years ago by Matteo Schiavinato ★ 3.6k
1
vote
1
reply
3.0k
views
SplitsTree command line mode
SplitsTree phylogeny network command line pipeline
5.5 years ago by Matteo Schiavinato ★ 3.6k
1
vote
0
replies
3.0k
views
Answer: A: SplitsTree command line mode
5.5 years ago by Matteo Schiavinato ★ 3.6k
1
vote
0
replies
1.2k
views
Comment: C: 4/6 genotype in VCF
5.5 years ago by Matteo Schiavinato ★ 3.6k
1
vote
0
replies
1.2k
views
Comment: C: 4/6 genotype in VCF
5.5 years ago by Matteo Schiavinato ★ 3.6k
1
vote
0
replies
5.5k
views
Comment: C: what is the easiest/fastest way to convert from BAM to GTF
5.5 years ago by Matteo Schiavinato ★ 3.6k
0
votes
0
replies
5.2k
views
Answer: A: how specify feature type in featureCounts
5.5 years ago by Matteo Schiavinato ★ 3.6k
1
vote
1
reply
1.2k
views
Comment: C: 4/6 genotype in VCF
5.5 years ago by Matteo Schiavinato ★ 3.6k
0
votes
1
reply
3.9k
views
Comment: C: hisat2 warning message dunring alignment of fasta file with reference genome
5.6 years ago by Matteo Schiavinato ★ 3.6k
0
votes
0
replies
3.2k
views
Comment: C: Problems running variant calling (VC) GATK: SAM/BAM/CRAM file dedup.bam is malfo
5.6 years ago by Matteo Schiavinato ★ 3.6k
3
votes
1
reply
3.2k
views
Answer: A: Problems running VC GATK: SAM/BAM/CRAM file dedup.bam is malformed
5.6 years ago by Matteo Schiavinato ★ 3.6k
0
votes
0
replies
2.9k
views
Comment: C: featurecounts more fragments than input read pairs
5.6 years ago by Matteo Schiavinato ★ 3.6k
0
votes
0
replies
2.0k
views
Comment: C: Getting a distinct set of Gene Ontology terms
5.6 years ago by Matteo Schiavinato ★ 3.6k
1
vote
0
replies
3.1k
views
Comment: C: rsem-calculate-expression error message
5.6 years ago by Matteo Schiavinato ★ 3.6k
600 results • Page 2 of 12
Content Search
Users
Tags
Badges
Help About
FAQ
Access RSS
API
Stats

Use of this site constitutes acceptance of our User Agreement and Privacy Policy.

Powered by the version 2.3.6