User: azaharamft

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azaharamft0
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Posts by azaharamft

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Comment: C: ERROR USING BWASW (BWA 0.7.15-r1140): bwtsw2_pair.c line 122: failed to alloca
... Hello! Thanks for your suggestions. I have tried with mem instead of sw and everything worked fine without errors, though I still do not know what was the error about with sw. Anyway, mem also gave the expected results (for some reason in my initial tests it did not give the desired results and I di ...
written 19 months ago by azaharamft0
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Comment: C: ERROR USING BWASW (BWA 0.7.15-r1140): bwtsw2_pair.c line 122: failed to alloca
... Thanks four your appreciation, but the best approach I have made for this analysis requires bwasw because of split alignment. Alignment using mem does not fit the expected. Anyway, I will take your advice and test it with more mappers. ...
written 19 months ago by azaharamft0
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Comment: C: ERROR USING BWASW (BWA 0.7.15-r1140): bwtsw2_pair.c line 122: failed to alloca
... Thank you for your suggestion, but I have checked that using htop and it does not run out of memory (1G of 54G in use). The error happened both using processes and without them. ...
written 19 months ago by azaharamft0
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Error using bwasw (bwa 0.7.15-r1140): bwtsw2_pair.c line 122: failed to allocate memory
... Hello! I am having trouble while performing an alignment with bwasw in only a few fastqs coming from Miseq paired end targeted DNA-seq data. Reads are 300 bp long. The command used is: bwa bwasw -t4 $REF $fastq_R1 $fastq_R2 And this is the error I get: Failed to allocate -9223372036 ...
alignment dna-seq bwa written 19 months ago by azaharamft0 • updated 9 weeks ago by finswimmer10k

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