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2
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570
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Obtaining clinical data from the TCGA data portal
Cancer
hg38
TCGA
5 months ago by
elisheva
▴ 120
0
votes
2
replies
684
views
Obtaining Infinium Methylation450K manifest for hg38
TCGA
hg38
methylation
Illumina
updated 9 months ago by
Zhenyu Zhang
★ 1.2k • written 9 months ago by
elisheva
▴ 120
0
votes
0
replies
264
views
Get metadat from the ICGC data portal
hg38
ICGC
Cancer
11 months ago by
elisheva
▴ 120
0
votes
0
replies
557
views
Using DANPOS2 to determine nucleosome positions
MNase-seq
DANPOS
ENCODE
bigwig
2.0 years ago by
elisheva
▴ 120
0
votes
2
replies
718
views
Covid variant sequences
FASTA
VCF
variants
Covid
updated 2.9 years ago by
GenoMax
149k • written 2.9 years ago by
elisheva
▴ 120
2
votes
1
reply
1.3k
views
Error with SRA Toolkit prefetch command
timeout
sra
ncbi
https
updated 3.8 years ago by
ATpoint
87k • written 3.8 years ago by
elisheva
▴ 120
4
votes
5
replies
1.3k
views
Comparison of allele frequencies between population
SNP
vcf
1000 genome project
population
updated 4.1 years ago by
chrchang523
11k • written 4.1 years ago by
elisheva
▴ 120
0
votes
2
replies
900
views
Finding enhancers of the whole human body
enhancers
fantom5
CAGE-seq
4.8 years ago by
elisheva
▴ 120
2
votes
6
replies
2.0k
views
Retrive genomic sequences of genes of all ensembl organsims
sequence
sequencing
ensembl
ftp
gene
4.9 years ago by
elisheva
▴ 120
2
votes
0
replies
655
views
Extract the sequence of retrotransposons sites
genome
retrotransposons
ucsc
5.0 years ago by
elisheva
▴ 120
2
votes
3
replies
1.3k
views
Convert regex into DNAString object
R
bioconductor
Biostrings
5.5 years ago by
elisheva
▴ 120
2
votes
18
replies
3.4k
views
Help with finding introns
cDNA
genome
introns
updated 5.7 years ago by
Biostar
20 • written 7.7 years ago by
elisheva
▴ 120
5
votes
10
replies
4.6k
views
Finding exons and introns sequences
genome
sequence
exon
intron
ensembl
updated 6.3 years ago by
vkkodali_ncbi
★ 3.8k • written 6.3 years ago by
elisheva
▴ 120
0
votes
12
replies
2.5k
views
bedtools intersect issue
bed
bedtools
updated 23 months ago by
Ram
44k • written 6.5 years ago by
elisheva
▴ 120
6
votes
4
replies
3.7k
views
deepTools plot profile problem
deepTools
updated 23 months ago by
Ram
44k • written 6.7 years ago by
elisheva
▴ 120
4
votes
3
replies
2.0k
views
Plotting average profiles
R
Bioconductor
6.8 years ago by
elisheva
▴ 120
4
votes
9
replies
2.7k
views
The efficient way to generate fasta and bed files
python
fasta
bed
6.9 years ago by
elisheva
▴ 120
2
votes
2
replies
4.5k
views
Scatterplot with hexbin
R
Plot
hexbin
updated 7.1 years ago by
Nicolas Rosewick
11k • written 7.1 years ago by
elisheva
▴ 120
1
vote
2
replies
1.6k
views
Problem with loacting gtf file
gtf
ucsc
gene
updated 7.2 years ago by
GenoMax
149k • written 7.2 years ago by
elisheva
▴ 120
3
votes
5
replies
2.6k
views
Getting 3D model
3D
Oxaloacetate
updated 7.3 years ago by
Kevin Blighe
89k • written 7.3 years ago by
elisheva
▴ 120
2
votes
7
replies
2.6k
views
c.elegans W220 genes
c.elegans
database
updated 7.3 years ago by
Carlo Yague
8.9k • written 7.3 years ago by
elisheva
▴ 120
0
votes
2
replies
1.4k
views
Finding genes expression levels full data sets
expression
datasets
updated 7.3 years ago by
LLTommy
★ 1.2k • written 7.3 years ago by
elisheva
▴ 120
0
votes
0
replies
1.4k
views
plotting average dinucleotides ratio profile
R
Bioconductor
7.4 years ago by
elisheva
▴ 120
3
votes
8
replies
2.0k
views
Finding S. cerevisiae mRNA of specific genes from SGD db.
mRNA
SGD
Assembly
updated 7.4 years ago by
GenoMax
149k • written 7.4 years ago by
elisheva
▴ 120
3
votes
8
replies
2.0k
views
Best way to generate a bed file
bed
updated 23 months ago by
Ram
44k • written 7.5 years ago by
elisheva
▴ 120
4
votes
4
replies
3.0k
views
problem with downloading files
rsync
ensembl
updated 7.7 years ago by
Magali_Ensembl
▴ 160 • written 7.7 years ago by
elisheva
▴ 120
0
votes
3
replies
1.6k
views
FTP for cDNAs\mRNAs
FTP
cDNA
mRNA
updated 7.7 years ago by
Jean-Karim Heriche
27k • written 7.7 years ago by
elisheva
▴ 120
10
votes
18
replies
4.2k
views
A long run time problem
python
csv
genome
updated 7.8 years ago by
Joe
22k • written 7.8 years ago by
elisheva
▴ 120
2
votes
19
replies
6.4k
views
Writing a csv file python
python
genome
updated 7.8 years ago by
Alex Reynolds
36k • written 7.8 years ago by
elisheva
▴ 120
7
votes
9
replies
14k
views
Best way to processing huge fasta files using python.
python
fasta
updated 7.8 years ago by
unksci
▴ 180 • written 7.8 years ago by
elisheva
▴ 120
0
votes
5
replies
1.8k
views
Whole genome mRNA
genome
7.8 years ago by
elisheva
▴ 120
4
votes
10
replies
1.9k
views
phylogenetic tree analyse
phylogenetic
8.0 years ago by
elisheva
▴ 120
8
votes
11
replies
31k
views
needleman-wunsch algorithm on python
python
8.1 years ago by
elisheva
▴ 120
0
votes
8
replies
17k
views
find ORF in sequence python
sequence
updated 8.1 years ago by
natasha.sernova
★ 4.0k • written 8.1 years ago by
elisheva
▴ 120
2
votes
5
replies
5.0k
views
Generate Random Dna Sequence Data With Equal Base Frequencies python
sequence
8.2 years ago by
elisheva
▴ 120
5
votes
11
replies
5.8k
views
the distance between genes
genome
gene
updated 8.3 years ago by
Alex Reynolds
36k • written 8.3 years ago by
elisheva
▴ 120
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