User: denis.yuen

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denis.yuen100
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Posts by denis.yuen

<prev • 7 results • page 1 of 1 • next >
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Answer: A: load/parse cwl using Java
... FYI, https://github.com/common-workflow-language/cwlavro/issues/16#issuecomment-450888290 Note, be alert as to which version of the cwlavro you're using, I've been a bit messy with version numbers. 2.0.4 (what we currently use) let's you switch between cwltool (installed locally on the system) an ...
written 18 months ago by denis.yuen100
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Answer: A: Warning message: [outdir] is not a file, ignoring
... Hi, That's actually a missing (Dockstore) feature that we've encountered recently and have been working on filling. Simply put, the directory type was added in v1.0 of CWL and we didn't notice the the ability to designate a whole directory as output (as opposed to say, an array of files or a file ...
written 3.0 years ago by denis.yuen100
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Comment: C: Is SeqWare better and more reliable than Galaxy, Tavaxy, Yabi or Taverna in you
... Out of sheer curiosity, what is "Vassialking"? ...
written 3.6 years ago by denis.yuen100
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Answer: A: CWL: how to set default values
... As a heads-up, this is now a feature for Dockstore 1.1. You should be able to do the following $ dockstore tool convert cwl2json --cwl test.cwl { "example_string": "abc", "example_file": { "path": "fill me in", "class": "File" }, "example_flag": true, ...
written 3.6 years ago by denis.yuen100
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Answer: A: CWL: outputBindings with secondaryFiles
... Ah, I think I understand the confusion here. Apologies since I think we created it. 1) Dockstore input JSON can (optionally) include output parameters in order to provision files to locations like S3, icgc-storage, ftp. This is an artifact of Dockstore's beginnings in the pan-cancer project where ...
written 3.6 years ago by denis.yuen100
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Comment: C: CWL: outputBindings with secondaryFiles
... [deleted, accidentally posted as comment] ...
written 3.6 years ago by denis.yuen100
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Comment: C: CWL: outputBindings with secondaryFiles
... Is the "sure" here in reference to the question as to whether cwltool can generate an input json? ...
written 3.6 years ago by denis.yuen100

Latest awards to denis.yuen

Teacher 3.0 years ago, created an answer with at least 3 up-votes. For A: CWL: outputBindings with secondaryFiles
Scholar 3.5 years ago, created an answer that has been accepted. For A: CWL: outputBindings with secondaryFiles
Teacher 3.5 years ago, created an answer with at least 3 up-votes. For A: CWL: outputBindings with secondaryFiles
Teacher 3.6 years ago, created an answer with at least 3 up-votes. For A: CWL: outputBindings with secondaryFiles
Scholar 3.6 years ago, created an answer that has been accepted. For A: CWL: outputBindings with secondaryFiles

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