User: JMac

gravatar for JMac
JMac20
Reputation:
20
Status:
New User
Location:
Ireland
Last seen:
2 years, 1 month ago
Joined:
3 years, 7 months ago
Email:
j***************@gmail.com

Posts by JMac

<prev • 5 results • page 1 of 1 • next >
0
votes
2
answers
1.7k
views
2
answers
Comment: C: Batch download UniProt proteomes with list of proteome IDs
... Thanks, this is exactly what I was looking for. I rewrote the example code to accept proteome IDs instead of taxa IDs. ...
written 2.5 years ago by JMac20
7
votes
2
answers
1.7k
views
2
answers
Batch download UniProt proteomes with list of proteome IDs
... Is there any way to batch download UniProt proteomes based on a list of proteome IDs (e.g. UP000011712). I have a list of about 1,000 proteome IDs from UniProt. I know it is possible to do this with taxon IDs but I do not have these. So, is it possible to batch download proteomes based on proteome ...
proteome uniprot script written 2.5 years ago by JMac20 • updated 2.5 years ago by Elisabeth Gasteiger1.7k
0
votes
1
answer
1.2k
views
1
answers
Comment: C: getorf: Remove Overlapping Open Reading Frames
... I have read the manual but it doesn't mention anything about alternative/overlapping ORFs. ...
written 3.0 years ago by JMac20
1
vote
1
answer
1.2k
views
6 follow
1
answer
getorf: Remove Overlapping Open Reading Frames
... Hi, I am using `getorf` to extract open reading frames (at least 70 amino acids long) from genomes/scaffolds. I am using the command: getorf -find 1 -minsize 210 -sequence genome.fasta -outseq orfs.fasta My question is, does `getorf` report overlapping ORFs within the same reading frame? Out ...
genome software orfs genomics written 3.0 years ago by JMac20
2
votes
1
answer
1.1k
views
1
answer
SignalP results - extract full sequence for proteins with a signal peptide
... I am using the program SignalP (v4.1) to predict if proteins are secreted. Using the parameter `'-m'` generates a FASTA file containing the predicted signal peptide sequences. Is there any option to quickly generate a FASTA file containing the **entire sequence** of proteins containing signal pept ...
signalp fasta signal protein results written 3.7 years ago by JMac20

Latest awards to JMac

No awards yet. Soon to come :-)

Help
Access

Use of this site constitutes acceptance of our User Agreement and Privacy Policy.
Powered by Biostar version 2.3.0
Traffic: 1108 users visited in the last hour