User: mdurrant

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mdurrant10
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Posts by mdurrant

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Differential abundance of 15 genes in metagenomic sample.
... Say you have two metagenomic samples. You want to quantify the differential abundance of 15 genes between the two samples. What's the most straight-forward way to do this, while properly accounting for the sequencing depth of each library? ...
microbiome metagenomics next-gen sequencing written 11 months ago by mdurrant10 • updated 10 months ago by Asaf5.0k
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Representing a sequence as k-mer composition
... Hello, Could someone please explain this paragraph from from McHardy et al., 2007: **Compositional sequence patterns.** For ompositional feature analysis, we map a given piece of DNA sequence to a higher-dimensional space of nucleotide patterns o = {o1, o2, ..., oq}, where o is defined by the p ...
sequence kmer dna written 18 months ago by mdurrant10 • updated 17 months ago by marsvetlana10

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