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Posts by Bliptrip
... Thanks for the hint on using the NCBI ftp site. Nearly all the information I needed was in the lproks_1.txt. My only wish is that NCBI provided an archive (or revision history) of these, as this would give me an idea of the history when the genomes were marked 'complete'. Yeah, given the apparent ...
Ways To Programmatically Determine Whole Genome Completion Dates, Genomic Type, Given A Taxonomic Identifier?
... I have been tasked with determining statistical information on a dataset of microbial protein sequences, most importantly the average number of proteins per genome (think 'strain' or 'isolate') at a given taxonomic level. Given that some proteins in our dataset will come from incomplete genomes, I ...
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