User: wwu222

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wwu2220
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Posts by wwu222

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Comment: C: How to analyze RNAseq data with two/multiple treatment groups and each subject h
... Hi Kevin, really appreciate your suggestion! I will try it out. Thank you very much! ...
written 4 days ago by wwu2220
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Comment: C: How to analyze RNAseq data with two/multiple treatment groups and each subject h
... Hi Kevin, Thank you very much for your timely reply and great suggestions. I think the second suggestion is the answer I am looking for. However, each patient has pre, post paired design, I am wondering whether we have to consider this in the model? Thank you very much! ...
written 4 days ago by wwu2220
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How to analyze RNAseq data with two/multiple treatment groups and each subject has pre and post-treatment measures
... Hi, I am working on a set of RNAseq data that has the following design: 1. patients are randomized to different treatment groups: control, trt1 and trt2 2. each patient has pre and post treatment RNAseq data: time0 , time1 I am interested in getting treatment effect (not time effect). The model m ...
rna-seq written 7 days ago by wwu2220 • updated 5 days ago by Kevin Blighe39k
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Comment: C: tophat2 0% mapping rate for strand-specific RNA-seq
... Hi, I am using tophat2 to align fastq downloaded from dbGaP, and have the same issue. Have you figured out the solution yet? Thanks. ...
written 2.3 years ago by wwu2220

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