Profile Posts Awards
Show
all questions tools blogs news tutorials forum answers comments
Showing : all
0
votes
0
replies
312
views
How Can I Identify Genes in the Top 100 Rank Space from SVD?
Singular-Value-Decomposition Dimension-Reduction SVD
updated 7 months ago by 43k • written 7 months ago by ▴ 260
0
votes
1
reply
966
views
Comment: Comment: How to construct an adjacency matrix based on output of nearest neighbors sear
7 months ago by Raheleh ▴ 260
2
votes
5
replies
966
views
How to construct an adjacency matrix based on output of nearest neighbors search method from RANN package?
igraph RANN adjacency-matrix
updated 7 months ago by ★ 2.3k • written 7 months ago by ▴ 260
0
votes
1
reply
966
views
Comment: Comment: How to construct an adjacency matrix based on output of nearest neighbors sear
7 months ago by Raheleh ▴ 260
0
votes
0
replies
50k
views
Comment: Comment: Network plot from expression data in R using igraph
7 months ago by Raheleh ▴ 260
0
votes
0
replies
376
views
how to ensure that embedding for the new data is initialized based on the embedding of the existing data in UMAP?
UMAP
10 months ago by Raheleh ▴ 260
0
votes
1
reply
899
views
Comment: Comment: How to resolve this Error in checkFullRank(modelMatrix) in DESeq2 ?
2.1 years ago by Raheleh ▴ 260
0
votes
0
replies
899
views
Comment: Comment: How to resolve this Error in checkFullRank(modelMatrix) in DESeq2 ?
2.1 years ago by Raheleh ▴ 260
0
votes
4
replies
899
views
How to resolve this Error in checkFullRank(modelMatrix) in DESeq2 ?
Batch correction DESeq2 RNAseq
updated 2.1 years ago by 6.5k • written 2.1 years ago by ▴ 260
0
votes
1
reply
5.2k
views
Comment: Comment: TMM-Normalization
2.5 years ago by Raheleh ▴ 260
4
votes
8
replies
1.9k
views
how to get ride of duplicated genes when we also have duplicated Ensemble ID in the expression profile?
RNA-Seq duplicated ENSEMBLE ID collapseRows
updated 2.5 years ago by ▴ 40 • written 3.6 years ago by ▴ 260
1
vote
1
reply
620
views
problem with contrastive principal component analysis (cPCA)
scPCA cPCA
updated 2.9 years ago by 81k • written 2.9 years ago by ▴ 260
0
votes
0
replies
846
views
How RNAseq input file for ssGSAE should be normalized?
VST ssGSEA normalization
2.8 years ago by Raheleh ▴ 260
2
votes
1
reply
791
views
Why the result of GSEA and ssGSEA is different?
ssgsea gsea
updated 9 months ago by • 0 • written 3.1 years ago by ▴ 260
0
votes
0
replies
668
views
How to do differential CNA analysis?
CNA GISTIC Differential analysis
3.2 years ago by Raheleh ▴ 260
0
votes
0
replies
2.0k
views
Comment: C: Copy number differences between groups
3.2 years ago by Raheleh ▴ 260
0
votes
0
replies
588
views
Normalizing multiple conditons all together
RMA microarray time-series
updated 10 months ago by 43k • written 3.4 years ago by ▴ 260
0
votes
0
replies
7.1k
views
Answer: A: COnverting mouse gene ID to Human gene ID
3.5 years ago by Raheleh ▴ 260
0
votes
1
reply
36k
views
Comment: C: PCA in a RNA seq analysis
3.5 years ago by Raheleh ▴ 260
0
votes
1
reply
1.6k
views
Comment: C: Finding a gene signature among multiple group
3.6 years ago by Raheleh ▴ 260
0
votes
1
reply
1.6k
views
Comment: C: Finding a gene signature among multiple group
3.6 years ago by Raheleh ▴ 260
0
votes
0
replies
1.6k
views
Comment: C: Finding a gene signature among multiple group
3.6 years ago by Raheleh ▴ 260
7
votes
7
replies
1.6k
views
Finding a gene signature among multiple group
SAM RNAseq signature
updated 17 months ago by ★ 1.2k • written 3.6 years ago by ▴ 260
0
votes
0
replies
2.3k
views
Comment: C: Methods for contrasting gene expression profiles between multiple groups
3.6 years ago by Raheleh ▴ 260
0
votes
0
replies
1.6k
views
Comment: C: Finding a gene signature among multiple group
3.6 years ago by Raheleh ▴ 260
0
votes
1
reply
1.9k
views
Comment: C: how to get ride of duplicated genes when we also have duplicated Ensemble ID in
3.6 years ago by Raheleh ▴ 260
0
votes
1
reply
1.9k
views
Comment: C: how to get ride of duplicated genes when we also have duplicated Ensemble ID in
3.6 years ago by Raheleh ▴ 260
0
votes
0
replies
1.9k
views
Comment: C: how to get ride of duplicated genes when we also have duplicated Ensemble ID in
3.6 years ago by Raheleh ▴ 260
0
votes
1
reply
1.3k
views
Comment: C: Batch correction using DESeq2
3.8 years ago by Raheleh ▴ 260
5
votes
9
replies
1.3k
views
Batch correction using DESeq2
RNA-Seq deseq2 batch vst
3.8 years ago by Raheleh ▴ 260
0
votes
1
reply
1.3k
views
Comment: C: Batch correction for one condition in DESeq2
3.8 years ago by Raheleh ▴ 260
1
vote
1
reply
28k
views
Comment: C: Batch correction in DESeq2
3.8 years ago by Raheleh ▴ 260
0
votes
1
reply
1.3k
views
Comment: C: Batch correction for one condition in DESeq2
3.8 years ago by Raheleh ▴ 260
0
votes
0
replies
1.3k
views
Comment: C: Batch correction for one condition in DESeq2
3.8 years ago by Raheleh ▴ 260
0
votes
0
replies
11k
views
Comment: C: how to use ESTIMATE to infer tumor purity and stromal score from RNA-seq data?
3.8 years ago by Raheleh ▴ 260
0
votes
0
replies
32k
views
Comment: C: How to create a mutation landscape (waterfall) plot with GenVisR
3.8 years ago by Raheleh ▴ 260
0
votes
0
replies
32k
views
Comment: C: How to create a mutation landscape (waterfall) plot with GenVisR
3.8 years ago by Raheleh ▴ 260
0
votes
0
replies
32k
views
Comment: C: How to create a mutation landscape (waterfall) plot with GenVisR
3.8 years ago by Raheleh ▴ 260
0
votes
0
replies
5.0k
views
Comment: C: Gene expression data set scaling
3.9 years ago by Raheleh ▴ 260
0
votes
1
reply
1.0k
views
Why some genes with negative fold change are assigned as activated upstream regulators by IPA?
IPA Upstream regulator activation z-score
4.0 years ago by Raheleh ▴ 260
0
votes
1
reply
7.2k
views
Comment: C: Only doing log2 transformation for RNAseq read count data without normalizing by
4.1 years ago by Raheleh ▴ 260
24
votes
16
replies
7.2k
views
Only doing log2 transformation for RNAseq read count data without normalizing by DESeq2 ??!
RNA-Seq readcount deseq2 log2
updated 4.1 years ago by 81k • written 4.1 years ago by ▴ 260
0
votes
1
reply
7.2k
views
Comment: C: Only doing log2 transformation for RNAseq read count data without normalizing by
updated 4.1 years ago by 43k • written 4.1 years ago by ▴ 260
0
votes
2
replies
7.2k
views
Comment: C: Only doing log2 transformation for RNAseq read count data without normalizing by
updated 4.1 years ago by 43k • written 4.1 years ago by ▴ 260
0
votes
0
replies
2.2k
views
Comment: C: how to plot lollipop in which dots show mean/median for each variable?
4.2 years ago by Raheleh ▴ 260
0
votes
1
reply
2.2k
views
Comment: C: Why Wilcox.test keep giving (p-val = 0.1) even when there is significant differe
4.2 years ago by Raheleh ▴ 260
10
votes
6
replies
2.2k
views
Why Wilcox.test keep giving (p-val = 0.1) even when there is significant difference between the data?
wilcox.test ssGSEA significant level ggplot
updated 4.2 years ago by ▴ 290 • written 4.2 years ago by ▴ 260
0
votes
1
reply
2.2k
views
Comment: C: how to plot lollipop in which dots show mean/median for each variable?
4.2 years ago by Raheleh ▴ 260
0
votes
1
reply
2.2k
views
Comment: C: how to plot lollipop in which dots show mean/median for each variable?
4.2 years ago by Raheleh ▴ 260
0
votes
1
reply
2.2k
views
Comment: C: how to plot lollipop in which dots show mean/median for each variable?
4.2 years ago by Raheleh ▴ 260
121 results • Page 1 of 3
Content Search
Users
Tags
Badges
Help About
FAQ
Access RSS
API
Stats

Use of this site constitutes acceptance of our User Agreement and Privacy Policy.

Powered by the version 2.3.6