User: Raheleh

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Singular-Value-Decomposition Dimension-Reduction SVD

updated 7 months ago by Ram 43k • written 7 months ago by Raheleh ▴ 260

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5

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969

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igraph RANN adjacency-matrix

updated 7 months ago by bk11 ★ 2.3k • written 7 months ago by Raheleh ▴ 260

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377

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UMAP

10 months ago by Raheleh ▴ 260

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4

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902

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Batch correction DESeq2 RNAseq

updated 2.1 years ago by andrew.j.skelton73 6.5k • written 2.1 years ago by Raheleh ▴ 260

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8

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1.9k

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RNA-Seq duplicated ENSEMBLE ID collapseRows

updated 2.5 years ago by fana ▴ 40 • written 3.6 years ago by Raheleh ▴ 260

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1

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620

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scPCA cPCA

updated 2.9 years ago by ATpoint 81k • written 2.9 years ago by Raheleh ▴ 260

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850

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VST ssGSEA normalization

2.8 years ago by Raheleh ▴ 260

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1

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794

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ssgsea gsea

updated 9 months ago by evertzz • 0 • written 3.1 years ago by Raheleh ▴ 260

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669

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CNA GISTIC Differential analysis

3.2 years ago by Raheleh ▴ 260

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590

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RMA microarray time-series

updated 10 months ago by Ram 43k • written 3.5 years ago by Raheleh ▴ 260

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7

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1.6k

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SAM RNAseq signature

updated 17 months ago by 1769mkc ★ 1.2k • written 3.6 years ago by Raheleh ▴ 260

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9

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1.3k

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RNA-Seq deseq2 batch vst

3.8 years ago by Raheleh ▴ 260

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1.0k

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IPA Upstream regulator activation z-score

4.0 years ago by Raheleh ▴ 260

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16

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7.2k

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RNA-Seq readcount deseq2 log2

updated 4.1 years ago by ATpoint 81k • written 4.1 years ago by Raheleh ▴ 260

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6

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2.2k

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wilcox.test ssGSEA significant level ggplot

updated 4.2 years ago by Constantine ▴ 290 • written 4.2 years ago by Raheleh ▴ 260

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14

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2.2k

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lollipop plot ggplot2

updated 4.2 years ago by Asaf 10k • written 4.2 years ago by Raheleh ▴ 260

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3

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2.6k

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survival Hazard Ratio kaplan meier

updated 4.2 years ago by discombobulated ▴ 10 • written 4.3 years ago by Raheleh ▴ 260

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880

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PAMR RNAseq prediction

4.3 years ago by Raheleh ▴ 260

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4

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844

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Statistical test classifier Fisher's exact test

updated 4.3 years ago by Kevin Blighe 87k • written 4.3 years ago by Raheleh ▴ 260

2

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1

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784

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GSEA gene signature pathway enrichment analysis

updated 4.4 years ago by dsull ★ 5.8k • written 4.4 years ago by Raheleh ▴ 260

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4

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7.7k

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kaplan meier Hazard Ratio r ggsurvplot

4.4 years ago by Raheleh ▴ 260

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2

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1.3k

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UpSetR Intersections upset

updated 4.4 years ago by russhh 5.7k • written 4.4 years ago by Raheleh ▴ 260

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8

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9.5k

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GSEA plot fgsea r plotEnrichment

updated 4.4 years ago by Barry Digby ★ 1.3k • written 4.4 years ago by Raheleh ▴ 260

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5

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1.1k

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lasso-penalised Coefficient predictor

updated 4.6 years ago by Jean-Karim Heriche 27k • written 4.6 years ago by Raheleh ▴ 260

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7

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1.2k

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Probe ID of the same gene

updated 4.6 years ago by ATpoint 81k • written 4.6 years ago by Raheleh ▴ 260

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20

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4.0k

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PCA Centering expression data

4.7 years ago by Raheleh ▴ 260

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1

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3.1k

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affymetrix microarray custom cdf gene symbol

updated 4.9 years ago by Kevin Blighe 87k • written 7.4 years ago by Raheleh ▴ 260

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4

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4.1k

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WES VCF Somatic variations VarScan2 SnpEff

updated 5.0 years ago by bari.ballew ▴ 460 • written 5.4 years ago by Raheleh ▴ 260

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3

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3.6k

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bcftools CNV vcf

updated 2.5 years ago by Waly • 0 • written 5.2 years ago by Raheleh ▴ 260

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9

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4.8k

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vcf2maf GRCh38 varscan

5.2 years ago by Raheleh ▴ 260

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3

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1.3k

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CNV VarScan annotation

updated 5.2 years ago by Pierre Lindenbaum 161k • written 5.2 years ago by Raheleh ▴ 260

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1

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3.0k

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R mclust lgfortran

updated 5.3 years ago by Jean-Karim Heriche 27k • written 5.3 years ago by Raheleh ▴ 260

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2

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2.0k

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bam-readcount varscan fpfilter snp calling

updated 5.3 years ago by Biostar 20 • written 5.4 years ago by Raheleh ▴ 260

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13

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7.9k

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picard

updated 5.4 years ago by Pierre Lindenbaum 161k • written 5.4 years ago by Raheleh ▴ 260

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7

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3.2k

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varscan2 merge vcf SNP indel

5.4 years ago by Raheleh ▴ 260

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7

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3.0k

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VarScan2 WES data duplicate realignment

updated 5.4 years ago by ATpoint 81k • written 5.4 years ago by Raheleh ▴ 260

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3

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1.3k

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bam-readcount hc.readcount file BAM index

updated 5.4 years ago by ATpoint 81k • written 5.4 years ago by Raheleh ▴ 260

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1.3k

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picard NormalizeFasta varscan bam-readcount

5.4 years ago by Raheleh ▴ 260

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2

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1.1k

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WES data linux command line

5.4 years ago by Raheleh ▴ 260

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3

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1.5k

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WES data mpileup file varscan

updated 5.5 years ago by ATpoint 81k • written 5.5 years ago by Raheleh ▴ 260

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3

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2.2k

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limma microarray bioconductor R

updated 6 days ago by Ram 43k • written 6.3 years ago by Raheleh ▴ 260

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7

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6.6k

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affymetrix microarray NA genesymbol

updated 7.4 years ago by Biostar 20 • written 7.4 years ago by Raheleh ▴ 260