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Posts by Kmcarr
Comment: C: Taxonomy And Date Of Divergence
... FAQ #5 "Q: Can I download the TimeTree Database data on to my computer? The TimeTree Database data is currently not available for download. Methods for making these data available in the future are currently under discussion." -1 for that. +1 for creating an iPad App (http://itunes.apple.com/us/app/ ...
... You don't need to make the taxid_map file yourself, NCBI has already done it for you. The file you want is gi_taxid_nucl.dmp.gz and you can download it from ftp://ftp.ncbi.nih.gov/pub/taxonomy/ ...
... Yes, but that bit you quoted appears to refer specifically to providing reads in a SAM/BAM file, not FASTA/Q. The paragraph immediately following that one says, "Velvet requires that paired-end FASTA and FASTQ datasets come in a single merged file where each read is paired with the one directly abov ...
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