User: minesrebollo

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Posts by minesrebollo

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Comment: A: Which is the best input file for denovo assembly with Illumina paired data: Fast
... So, maybe I shouldn't trust this assembly and run another with just the fastq files? Thanks a lot!! ...
written 3.6 years ago by minesrebollo0
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Comment: C: Which is the best input file for denovo assembly with Illumina paired data: Fast
... Hi! Its the same data ...
written 3.6 years ago by minesrebollo0
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Which is the best input file for denovo assembly with Illumina paired data: Fastq, Fasta or Fasta interlaced ?
... Hi, I am doing denovo assembly on Illumina paired reads with SOAPdenovo2. It allows fastq, fasta, fasta interlaced and bam files. I am now trying and assembly with the first three ones at the same time and it's taking a long time. I wonder if it might be redundant to put all this information. In cas ...
assembly written 3.6 years ago by minesrebollo0
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Comment: C: SOAP denovo permission denied
... I downloaded the pre-compiled version that is supposed to be ready to be executed directly. Should I install it? ...
written 3.6 years ago by minesrebollo0
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Comment: C: SOAP denovo permission denied
... Thanks 5heikki for your answer! I did what you said and solved that but right after came across with another problem which I describe below. I've been reading more about UNIX but still can't realize what im doing wrong. I'd really appreciate your help :) ...
written 3.6 years ago by minesrebollo0
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Comment: C: SOAP denovo permission denied
... Hi WouterDeCoster, thanks a lot for your answer. I executed the script from the directory where SOAPdenovo-63mer is which I can write and I still cant do it. Fist I tried: ./SOAPdenovo-63mer all -s /path/config_file -K 63 -R -o graph_prefix 1>ass.log 2>ass.err and in ass.err I get: bash: ./ ...
written 3.6 years ago by minesrebollo0
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Comment: C: SOAP denovo permission denied
... Sorry, I am new to all this. Thanks for the advice, wont do it again. ...
written 3.6 years ago by minesrebollo0
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SOAP denovo permission denied
... Hi! I'm new to bioinformatics and linux. I've downloaded the latest pre-compiled binary version of SOAPdenovo2 and placed it in a directory in my Desktop. I unpacked it using tar -zxf. I also created a config file and have all my fastq, fasta and bam files ready on another directory in my Desktop. ...
assembly written 3.6 years ago by minesrebollo0 • updated 3.6 years ago by WouterDeCoster44k

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