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Answer: Answer: CNV calling on targeted sequencing. Filter based on distance to target?
2.4 years ago by markus.riester ▴ 550
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1.0k
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Answer: Answer: tumor fraction estimation for ctDNA panel sequecing data
2.5 years ago by markus.riester ▴ 550
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1.0k
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Answer: Answer: PureCN issue: having problems running a small example
2.7 years ago by markus.riester ▴ 550
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3.7k
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Answer: Answer: Relation between copy number log ratio and copy number
2.9 years ago by markus.riester ▴ 550
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1.0k
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Answer: A: Not able to find barcode file for Spatial Transcriptomic data
3.7 years ago by markus.riester ▴ 550
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3.6k
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Answer: A: purecn with cnvkit
3.8 years ago by markus.riester ▴ 550
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3.6k
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Answer: A: purecn with cnvkit
3.8 years ago by markus.riester ▴ 550
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1.3k
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Answer: A: TCGA capture kits
3.9 years ago by markus.riester ▴ 550
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1.2k
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Answer: A: PureCN mappingbiasfile and minimum number of NormalDB samples question
4.1 years ago by markus.riester ▴ 550
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1.6k
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Answer: A: TCGA CNV data reformatting
4.1 years ago by markus.riester ▴ 550
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2.6k
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Answer: A: PureCN prepare environment error
4.2 years ago by markus.riester ▴ 550
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2
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2.6k
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Answer: A: PureCN prepare environment error
4.2 years ago by markus.riester ▴ 550
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4.1k
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Answer: A: Somatic variant calling with/without matched normal sample (Mutect2)
4.5 years ago by markus.riester ▴ 550
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1.5k
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Answer: A: estimate tumor purity from capture panel data using tumor-only mode
4.8 years ago by markus.riester ▴ 550
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1.8k
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Answer: A: Library size normalization during CNV calling from genomically doubled tumor tis
5.1 years ago by markus.riester ▴ 550
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1.1k
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Answer: A: Effect size in power analysis when dealing with Poisson based variant caller
5.1 years ago by markus.riester ▴ 550
3
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2
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4.1k
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Answer: A: Ploidy Correction In NGS cancer data (human)
5.3 years ago by markus.riester ▴ 550
2
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1.3k
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Answer: A: CNV Segmentation density - non-zero?
5.3 years ago by markus.riester ▴ 550
2
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1
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2.1k
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Answer: A: Adding IDT CNV Backbone Spike-in to Small Targeted Panel for CNV Calling With CN
5.3 years ago by markus.riester ▴ 550
3
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2.4k
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Answer: A: Passing cnvkit output to pureCN to account for cellularity
5.4 years ago by markus.riester ▴ 550
2
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1
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2.9k
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Answer: A: Panel of Normals
5.5 years ago by markus.riester ▴ 550
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1.2k
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Answer: A: Pool of Normals- PureCN
5.5 years ago by markus.riester ▴ 550
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1.7k
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Answer: A: PureCN: Tool for estimation of tumor purity and ploidy
5.5 years ago by markus.riester ▴ 550
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1.6k
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Answer: A: Are the somatic mutations in TCGA filtered for germline mutations?
5.6 years ago by markus.riester ▴ 550
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3.0k
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Answer: A: How to use result of CNVkit to estimate purity by PureCN
6.0 years ago by markus.riester ▴ 550
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1.5k
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Answer: A: Calling somatic muttaions in pediatric tumor samples without matched normal samp
6.3 years ago by markus.riester ▴ 550
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1
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3.5k
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Answer: A: Infer somatic mutations without normal control
6.7 years ago by markus.riester ▴ 550
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1.2k
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Answer: A: WES chromosome Y off-target reads coverage compare to autosome
6.7 years ago by markus.riester ▴ 550
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3.7k
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Answer: A: Suggestions regarding bioinformatics journal
6.7 years ago by markus.riester ▴ 550
1
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4.9k
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Answer: A: ABSOLUTE R package - CreateReviewObject Error, Error in seq_len(M) : argument mu
6.9 years ago by markus.riester ▴ 550
2
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2.9k
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Answer: A: CNV calls in VCF format, conversion to PCAWG-11 Calibration
7.0 years ago by markus.riester ▴ 550
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0
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4.3k
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Answer: A: WES samples failing ABSOLUTE
7.1 years ago by markus.riester ▴ 550
1
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2.6k
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Answer: A: Merging CNVs from multiple tumor samples from the same patient
7.1 years ago by markus.riester ▴ 550
7
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1
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2.7k
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Answer: A: WES or WGS analysis of cancer samples with no matched germline
7.2 years ago by markus.riester ▴ 550
2
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0
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9.4k
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Answer: A: Tumor Mutation Burden calculation: all_mut vs non_synonym
7.2 years ago by markus.riester ▴ 550
2
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2
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3.4k
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Answer: A: "Shifted" copy number ratios coming from cnvkit?
7.2 years ago by markus.riester ▴ 550
2
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0
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3.7k
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Answer: C: Is there a consensus that Matlab is the wrong language for open-access bioinform
7.5 years ago by markus.riester ▴ 550
2
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0
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2.6k
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Answer: A: Comparison of exome variant allele frequencies
7.5 years ago by markus.riester ▴ 550
0
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0
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5.0k
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Answer: A: Copy Number Variation Tools
7.5 years ago by markus.riester ▴ 550
3
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1
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2.1k
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Answer: A: Somatic variant caller
7.5 years ago by markus.riester ▴ 550
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1
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3.8k
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Answer: A: The ABSOLUTE input and HAPSEG output format
7.5 years ago by markus.riester ▴ 550
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4.1k
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Answer: A: Ploidy in copy number analysis
7.5 years ago by markus.riester ▴ 550
2
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1
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1.7k
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Answer: C: purify tumor samples and remove normal cells
7.8 years ago by markus.riester ▴ 550
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