Profile Posts Awards
Show
all questions tools blogs news tutorials forum answers comments
Showing : answers
1
vote
0
replies
577
views
Answer: Answer: CNV calling on targeted sequencing. Filter based on distance to target?
2.0 years ago by markus.riester ▴ 550
0
votes
1
reply
892
views
Answer: Answer: tumor fraction estimation for ctDNA panel sequecing data
2.1 years ago by markus.riester ▴ 550
1
vote
0
replies
912
views
Answer: Answer: PureCN issue: having problems running a small example
2.4 years ago by markus.riester ▴ 550
1
vote
1
reply
3.1k
views
Answer: Answer: Relation between copy number log ratio and copy number
2.5 years ago by markus.riester ▴ 550
0
votes
0
replies
962
views
Answer: A: Not able to find barcode file for Spatial Transcriptomic data
3.4 years ago by markus.riester ▴ 550
0
votes
1
reply
3.3k
views
Answer: A: purecn with cnvkit
3.4 years ago by markus.riester ▴ 550
0
votes
1
reply
3.3k
views
Answer: A: purecn with cnvkit
3.4 years ago by markus.riester ▴ 550
0
votes
0
replies
1.2k
views
Answer: A: TCGA capture kits
3.6 years ago by markus.riester ▴ 550
0
votes
0
replies
1.1k
views
Answer: A: PureCN mappingbiasfile and minimum number of NormalDB samples question
3.7 years ago by markus.riester ▴ 550
0
votes
1
reply
1.5k
views
Answer: A: TCGA CNV data reformatting
3.8 years ago by markus.riester ▴ 550
0
votes
0
replies
2.3k
views
Answer: A: PureCN prepare environment error
3.8 years ago by markus.riester ▴ 550
0
votes
2
replies
2.3k
views
Answer: A: PureCN prepare environment error
3.8 years ago by markus.riester ▴ 550
1
vote
1
reply
3.7k
views
Answer: A: Somatic variant calling with/without matched normal sample (Mutect2)
4.1 years ago by markus.riester ▴ 550
0
votes
0
replies
1.4k
views
Answer: A: estimate tumor purity from capture panel data using tumor-only mode
4.4 years ago by markus.riester ▴ 550
0
votes
1
reply
1.6k
views
Answer: A: Library size normalization during CNV calling from genomically doubled tumor tis
4.7 years ago by markus.riester ▴ 550
1
vote
0
replies
950
views
Answer: A: Effect size in power analysis when dealing with Poisson based variant caller
4.8 years ago by markus.riester ▴ 550
3
votes
2
replies
3.7k
views
Answer: A: Ploidy Correction In NGS cancer data (human)
4.9 years ago by markus.riester ▴ 550
2
votes
1
reply
1.2k
views
Answer: A: CNV Segmentation density - non-zero?
4.9 years ago by markus.riester ▴ 550
2
votes
1
reply
2.0k
views
Answer: A: Adding IDT CNV Backbone Spike-in to Small Targeted Panel for CNV Calling With CN
5.0 years ago by markus.riester ▴ 550
3
votes
1
reply
2.2k
views
Answer: A: Passing cnvkit output to pureCN to account for cellularity
5.0 years ago by markus.riester ▴ 550
2
votes
1
reply
2.7k
views
Answer: A: Panel of Normals
5.1 years ago by markus.riester ▴ 550
1
vote
0
replies
1.2k
views
Answer: A: Pool of Normals- PureCN
5.1 years ago by markus.riester ▴ 550
1
vote
1
reply
1.6k
views
Answer: A: PureCN: Tool for estimation of tumor purity and ploidy
5.1 years ago by markus.riester ▴ 550
1
vote
1
reply
1.6k
views
Answer: A: Are the somatic mutations in TCGA filtered for germline mutations?
5.2 years ago by markus.riester ▴ 550
1
vote
1
reply
2.8k
views
Answer: A: How to use result of CNVkit to estimate purity by PureCN
5.6 years ago by markus.riester ▴ 550
0
votes
0
replies
1.5k
views
Answer: A: Calling somatic muttaions in pediatric tumor samples without matched normal samp
5.9 years ago by markus.riester ▴ 550
1
vote
1
reply
3.1k
views
Answer: A: Infer somatic mutations without normal control
6.3 years ago by markus.riester ▴ 550
0
votes
0
replies
1.2k
views
Answer: A: WES chromosome Y off-target reads coverage compare to autosome
6.3 years ago by markus.riester ▴ 550
1
vote
0
replies
3.4k
views
Answer: A: Suggestions regarding bioinformatics journal
6.3 years ago by markus.riester ▴ 550
1
vote
0
replies
4.8k
views
Answer: A: ABSOLUTE R package - CreateReviewObject Error, Error in seq_len(M) : argument mu
6.6 years ago by markus.riester ▴ 550
2
votes
0
replies
2.8k
views
Answer: A: CNV calls in VCF format, conversion to PCAWG-11 Calibration
6.6 years ago by markus.riester ▴ 550
0
votes
0
replies
4.1k
views
Answer: A: WES samples failing ABSOLUTE
6.7 years ago by markus.riester ▴ 550
1
vote
0
replies
2.6k
views
Answer: A: Merging CNVs from multiple tumor samples from the same patient
6.7 years ago by markus.riester ▴ 550
7
votes
1
reply
2.6k
views
Answer: A: WES or WGS analysis of cancer samples with no matched germline
6.8 years ago by markus.riester ▴ 550
2
votes
0
replies
9.2k
views
Answer: A: Tumor Mutation Burden calculation: all_mut vs non_synonym
6.8 years ago by markus.riester ▴ 550
2
votes
2
replies
3.2k
views
Answer: A: "Shifted" copy number ratios coming from cnvkit?
6.9 years ago by markus.riester ▴ 550
2
votes
0
replies
3.3k
views
Answer: C: Is there a consensus that Matlab is the wrong language for open-access bioinform
7.1 years ago by markus.riester ▴ 550
2
votes
0
replies
2.5k
views
Answer: A: Comparison of exome variant allele frequencies
7.1 years ago by markus.riester ▴ 550
0
votes
0
replies
4.7k
views
Answer: A: Copy Number Variation Tools
7.1 years ago by markus.riester ▴ 550
3
votes
1
reply
2.0k
views
Answer: A: Somatic variant caller
7.1 years ago by markus.riester ▴ 550
0
votes
1
reply
3.7k
views
Answer: A: The ABSOLUTE input and HAPSEG output format
7.1 years ago by markus.riester ▴ 550
0
votes
0
replies
4.0k
views
Answer: A: Ploidy in copy number analysis
7.1 years ago by markus.riester ▴ 550
2
votes
1
reply
1.6k
views
Answer: C: purify tumor samples and remove normal cells
7.4 years ago by markus.riester ▴ 550
43 results • Page 1 of 1
Content Search
Users
Tags
Badges
Help About
FAQ
Access RSS
API
Stats

Use of this site constitutes acceptance of our User Agreement and Privacy Policy.

Powered by the version 2.3.6