User: Hazelin

gravatar for Hazelin
Hazelin100
Reputation:
100
Status:
New User
Location:
Singapore
Last seen:
8 years, 6 months ago
Joined:
8 years, 9 months ago
Email:
h*******@hotmail.com

I am a student, please help me! :D

Posts by Hazelin

<prev • 10 results • page 1 of 1 • next >
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3D Protein Translation Using Java
... Hi all, I need to do a translation using 2D arrays for my Superposition algorithm. Translation: I plan to use the CA as my invariant point which is usually the 2nd line in the pdb.txt file. So how go about doing that? Must I use an orthogonal matrix? Or can I just subtract the coordinates of file ...
java translation algorithm written 8.5 years ago by Hazelin100 • updated 8.5 years ago by Egon Willighagen5.2k
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Comment: C: Invariant Points
... Thank you for your help! :) ...
written 8.6 years ago by Hazelin100
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Invariant Points
... Hi all!! I would like to know how do I get the invariant points of 2 PDB structures because i need to superimpose them and program it in JAVA. Eg. How do I know what is the origin and so on.. How do I read the invariant points from the txt file? Is there any specific/ most used point for this? Tha ...
java structure written 8.6 years ago by Hazelin100 • updated 8.1 years ago by Neilfws48k
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Comment: C: Problem To Convert Pdb Text File To Jmol Jar File
... Sorry for the lack of clarity. Actually, no. It's 2 PDB entries because I'm doing a superposition algorithm using JAVA. So the target will remain in array1 but the query in array2 will undergo transformation and so on, thus I need the final product/output to be shown in Jmol. Thank you!! ...
written 8.6 years ago by Hazelin100
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6 follow
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Problem To Convert Pdb Text File To Jmol Jar File
... I have to read the co-ordinates of a 3D object from the text file that's from PDB and store it in an array and after storing the co-ordinates in the array, I need it to undergo some processes such as rotation & translation and finally, the final product would be a JAR file. The trick here is t ...
pdb java format file conversion written 8.6 years ago by Hazelin100 • updated 5 months ago by RamRS20k
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Comment: C: Integrating A Visualizer With Your Java Codes
... I am doing superposition. Thus I want to integrate the above mentioned so that when my Java program is compiled, the result of the rotation & translation will be shown at Jmol when 2 protein structures are on top of one another. ...
written 8.6 years ago by Hazelin100
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Integrating A Visualizer With Your Java Codes
... How do I integrate a visualizer(Jmol) with my java(JCreator) such that I can view my visualizer whenever I compile my custom-codes? Thanks~! ...
java visualization written 8.6 years ago by Hazelin100 • updated 8.1 years ago by Michael Kuhn5.0k
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Comment: C: Jmol, Java Help Needed~
... Thank you for your comment! I'm using an external program(jcreator) to write my own program and I'm having problems writing it because I'm very new to the world of Java. ...
written 8.6 years ago by Hazelin100
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Comment: C: Jmol, Java Help Needed~
... Is Biojava a software by itself? What does it do? Because when I run it with Jcreator, it doesn't exists. Thank you for the link! ...
written 8.6 years ago by Hazelin100
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Jmol, Java Help Needed~
... Hey, I am a student who needs help in my project. I need to rotate the protein structure(from PDB) using java and the result can be seen via Jmol visualizer. Also, I need to open 2 structures in the same visualizer to see the rotation of one structure on top of one another to calculate the RMSD. ...
java algorithm written 8.6 years ago by Hazelin100 • updated 8.1 years ago by Khader Shameer17k

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