User: Aabha

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Aabha120
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7 years, 2 months ago
Joined:
7 years, 8 months ago
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Posts by Aabha

<prev • 7 results • page 1 of 1 • next >
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Comment: C: Association Mapping And Fdr (False Discovery Rate) Test?
... Yes you right, I am doing QTL study. FDR approach most appropriate when multiple traits are being compaired or markers are not in extensive LD (Chen and Story 2006) ...
written 7.4 years ago by Aabha120
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Comment: C: Association Mapping And Fdr (False Discovery Rate) Test?
... It is not human study, it's a plant genome. Trait I considered like plant height, weight, etc. I am trying to some QTL related with these trait. It is not family based study. ...
written 7.4 years ago by Aabha120
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Association Mapping And Fdr (False Discovery Rate) Test?
... While we do marker trait correlation using widely used association mapping method, sometimes non significant p value gives significant q value from the FDR test – why? Can anybody explain about this matter? Thanks for your response. I am providing details about p value and q value for your kind inf ...
correlation test written 7.4 years ago by Aabha120 • updated 7.4 years ago by kumar.vinod81280
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What Is Background Ld?
... Can anybody explain about the term "background LD" and its usefulness in in LD mapping? ...
linkage genetics written 7.6 years ago by Aabha120 • updated 7.6 years ago by Genotepes950
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Generating Ld Decay Plot!!!
... Dear all in BioStar, I am working in the field of plant genomics and I want to do whole genome wide association mapping in plant. I have map information according each chromosome and their position, I have selected SSR markers from our genetic linkage map. I have already calculated LD using widely ...
linkage visualization written 7.6 years ago by Aabha120 • updated 10 months ago by dodoabdulmajid0
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Comment: C: Looking For Appropriate Software For Ld Plot Using Ssr Markers
... Thanks for your answer. But as I know these software ( HaploView or HelixTree) only works for SNP but not for SSR markers. ...
written 7.7 years ago by Aabha120
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Looking For Appropriate Software For Ld Plot Using Ssr Markers
... Dear all, I am doing research about association mapping in plant. I am having problem to make LD plot using SSR markers with the software TASSEL 2.1 because my material is heterozygous and the genotypes are not phased, so TASSEL 2.1 can’t calculate LD. I am looking for appropriate software that ...
linkage written 7.7 years ago by Aabha120 • updated 7.4 years ago by Larry_Parnell16k

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