User: Nasir

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Nasir160
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160
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6 years, 11 months ago
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7 years, 3 months ago
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3***@biostars.org

Posts by Nasir

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Comment: C: Comparing Order Of Genes In Two Lists Using Orderedlist
... Many thanks Martin! I have now been able to run this analysis by manipulating alpha. Looking at the plots etc, I think I have got the analysis I wanted. I have re-read the manual a few times, but still can't quite understand what alpha is! Could anyone please help explain this to someone with no for ...
written 7.2 years ago by Nasir160
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Comparing Order Of Genes In Two Lists Using Orderedlist
... Hi I would be very grateful for any suggestions on how to solve the following problem. I want to compare the order of genes in two ranked gene lists to determine if there is more similarity than would be expected by chance alone. Bioconductor package OrderedList should be able to do this, however I ...
R bioconductor written 7.2 years ago by Nasir160 • updated 7.2 years ago by Martin Morgan1.6k
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Comment: C: Probability Of Gene List Overlap
... Yes, just double checked, both phyper with lower-tail=false and (1-phyper) give same results as Michael mentioned. Thank you all. ...
written 7.3 years ago by Nasir160
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Probability of gene list overlap
... Is this the correct way to calculate the probability of overlap occurring by chance between two lists of unregulated genes generated from two independent experiments on the same tissue using the same platform? I am using R `phyper`. phyper(q, m, n, k, lower.tail = FALSE, log.p = FALSE) where: ...
gene R overlap written 7.3 years ago by Nasir160 • updated 10 months ago by Biostar ♦♦ 20

Latest awards to Nasir

Appreciated 7.3 years ago, created a post with more than 5 votes. For Probability Of Gene List Overlap
Popular Question 7.3 years ago, created a question with more than 1,000 views. For Probability Of Gene List Overlap
Student 7.3 years ago, asked a question with at least 3 up-votes. For Probability Of Gene List Overlap

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