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how to verify cis-eQTL results
gene snp
updated 4.0 years ago by ▴ 30 • written 6.2 years ago by ▴ 60
3
votes
4
replies
3.0k
views
download CNV file for breast cancer BRCA from TCGA website
gene
updated 4.7 years ago by ▴ 60 • written 6.4 years ago by ▴ 60
0
votes
0
replies
1.0k
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cis-methylation QTL code
R
updated 5.2 years ago by 20 • written 6.6 years ago by ▴ 60
0
votes
3
replies
1.5k
views
what is the difference between Random ,differentiated and causal SNPs
snp
updated 5.4 years ago by • 0 • written 6.7 years ago by ▴ 60
0
votes
1
reply
996
views
Why there is 2 copy numbers for same patients for the same gene?
cnv
updated 5.9 years ago by 23k • written 5.9 years ago by ▴ 60
3
votes
11
replies
4.5k
views
covert the file to .ped file
R
updated 6.0 years ago by 86k • written 6.0 years ago by ▴ 60
0
votes
2
replies
1.4k
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Methylation data duplicated for same gene
gene R
6.1 years ago by mms140130 ▴ 60
1
vote
1
reply
1.2k
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Snp data for BRCA normal tissue
SNP
updated 6.1 years ago by 20 • written 6.2 years ago by ▴ 60
2
votes
2
replies
1.4k
views
what is the difference between snps files in UCSC download
SNP
6.1 years ago by mms140130 ▴ 60
2
votes
11
replies
2.1k
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how to find snps within 1Kb from the gene
snps gene
updated 6.1 years ago by 35k • written 6.1 years ago by ▴ 60
4
votes
2
replies
1.1k
views
difference between 2 snp's data annotations
snp
updated 6.1 years ago by ▴ 280 • written 6.1 years ago by ▴ 60
5
votes
22
replies
3.3k
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Download snps within 1Mb from gene
gene SNP
6.2 years ago by mms140130 ▴ 60
0
votes
2
replies
2.5k
views
How To Annotate Methylation 27K?
gene
updated 6.2 years ago by • 0 • written 6.2 years ago by ▴ 60
3
votes
2
replies
1.6k
views
Gene annotation help
gene
updated 6.2 years ago by ▴ 260 • written 6.2 years ago by ▴ 60
1
vote
3
replies
1.1k
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what is gremline genotype ?
gene SNP
6.2 years ago by mms140130 ▴ 60
0
votes
5
replies
1.2k
views
how to write the output of a loop in R
R
updated 6.3 years ago by ▴ 10 • written 6.3 years ago by ▴ 60
0
votes
1
reply
1.5k
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copy number variation as a covariate in MatrixEQTL
R gene snp
6.4 years ago by mms140130 ▴ 60
4
votes
7
replies
2.3k
views
Cis- eQTL Question
gene SNP
updated 6.4 years ago by 6.5k • written 6.4 years ago by ▴ 60
7
votes
6
replies
2.1k
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how to select certain columns in R
R
updated 6.4 years ago by 104k • written 6.4 years ago by ▴ 60
0
votes
2
replies
2.6k
views
how to analyze CNV "copy number variation" data
R gene SNP
6.4 years ago by mms140130 ▴ 60
3
votes
1
reply
1.6k
views
how to do gene annotation
gene R
updated 6.4 years ago by ▴ 330 • written 6.4 years ago by ▴ 60
2
votes
1
reply
3.3k
views
survival analysis question
R
updated 6.5 years ago by ★ 1.9k • written 6.5 years ago by ▴ 60
0
votes
1
reply
1.1k
views
SNP Array meaning
snp
6.6 years ago by mms140130 ▴ 60
4
votes
6
replies
3.9k
views
Correct the error in the code
R
6.6 years ago by mms140130 ▴ 60
1
vote
1
reply
1.6k
views
color 2 hclust groups on pc1, pc2 plot
R gene
6.6 years ago by mms140130 ▴ 60
4
votes
3
replies
2.0k
views
how to visualize the distribution of 20,000 genes in gene expression data
R gene
6.6 years ago by mms140130 ▴ 60
15
votes
17
replies
1.6k
views
6 follow
select DE genes
R gene rna-seq
updated 6.6 years ago by ★ 4.7k • written 6.6 years ago by ▴ 60
0
votes
0
replies
923
views
Finding Low Quality SNPs
SNP snp R
6.7 years ago by mms140130 ▴ 60
3
votes
3
replies
2.0k
views
where to find mRNA data
RNA-Seq
updated 6.7 years ago by 20 • written 6.8 years ago by ▴ 60
0
votes
1
reply
1.2k
views
where can I find the race data of the Prostate cancer PRAD patients
snp genome
6.7 years ago by mms140130 ▴ 60
0
votes
0
replies
1.1k
views
different methods to account for population stratification
snp gene
6.7 years ago by mms140130 ▴ 60
7
votes
10
replies
1.6k
views
SNP Data Quality control
SNP R
updated 6.7 years ago by 20 • written 6.7 years ago by ▴ 60
0
votes
0
replies
900
views
Find SNPs genotype data for BRCA for both Normal and tumor tissues
SNP snp rna-seq
6.7 years ago by mms140130 ▴ 60
1
vote
1
reply
1.8k
views
firebrowse.org website Question
snp
6.8 years ago by mms140130 ▴ 60
4
votes
4
replies
2.6k
views
TCGA barcode for SNP sample
SNP
updated 6.8 years ago by ▴ 310 • written 6.8 years ago by ▴ 60
2
votes
8
replies
4.7k
views
how to give column names for a data in R
R
updated 6.8 years ago by ★ 1.2k • written 6.8 years ago by ▴ 60
2
votes
3
replies
3.3k
views
which R package to use to do Quality control for SNPs data
SNP R snp
updated 6.8 years ago by ▴ 360 • written 6.8 years ago by ▴ 60
2
votes
9
replies
1.3k
views
prepare the data for package (HardyWeinberg) to test the HWExactMat
R snp
updated 6.8 years ago by 104k • written 6.8 years ago by ▴ 60
1
vote
2
replies
2.3k
views
why and how to transform gene expression data ?
rna-seq RNA-Seq gene
6.8 years ago by mms140130 ▴ 60
0
votes
1
reply
1.9k
views
Question about MatrixEQTL
gene R snp
6.8 years ago by mms140130 ▴ 60
0
votes
0
replies
1.7k
views
definition of additive variance and dominance variance
gene
6.8 years ago by mms140130 ▴ 60
0
votes
1
reply
1.5k
views
understand gene expression data
rna-seq gene
updated 6.8 years ago by 7.5k • written 6.8 years ago by ▴ 60
4
votes
4
replies
1.2k
views
finding the gene contain the snps ID
gene R SNP
updated 6.9 years ago by ▴ 450 • written 6.9 years ago by ▴ 60
4
votes
2
replies
3.6k
views
Snps annotation using snpEff or R
SNP gene R
updated 6.9 years ago by 11k • written 6.9 years ago by ▴ 60
6
votes
17
replies
2.9k
views
Finding the Genes corresponding to given SNPs using python
SNP gene genome
updated 6.9 years ago by ★ 1.4k • written 6.9 years ago by ▴ 60
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