User: bio94

gravatar for bio94
bio9440
Reputation:
40
Status:
New User
Location:
Last seen:
2 months, 3 weeks ago
Joined:
1 year, 11 months ago
Email:
p**************@gmail.com

Posts by bio94

<prev • 28 results • page 1 of 3 • next >
0
votes
1
answer
148
views
1
answers
Comment: C: How to find key apoptotic markers across subtypes of a colorectal cancer dataset
... Thanks very much Kevin. ...
written 12 weeks ago by bio9440
0
votes
1
answer
148
views
1
answer
How to find key apoptotic markers across subtypes of a colorectal cancer dataset?
... I performed CMS and CRIS classification on the dataset GSE14333 and I have added the respective CMS and CRIS labels to my phenotype. I was wondering on how to proceed from here on, to find the key apoptotic markers across subtypes. I am sort of new to this whole thing, so would appreciate any help ...
R cancer apoptotic subtypes markers written 12 weeks ago by bio9440 • updated 12 weeks ago by Kevin Blighe32k
14
votes
4
answers
342
views
5 follow
4
answers
Boxplot each row in a dataset in R?
... How do I boxplot each row in a dataset in R? In the dataset below, I want to plot RF.CMS1.posteriorProb, RF.CMS2.posteriorProb, RF.CMS3.posteriorProb and RF.CMS4.posteriorProb for each GSM sample in column X. So separate boxplots for each row in column X, in R. Appreciate any help in this regard. ...
boxplot dataset plot R cancer written 12 weeks ago by bio9440 • updated 12 weeks ago by cpad011210.0k
1
vote
1
answer
219
views
1
answers
Comment: C: How to know which samples are treated and untreated?
... I believe they are Adjuvant Radiotherapy and Adjuvant chemotherapy. So If It's a YES for any one of these two columns, I consider them as TREATED. If a NO for both the columns I consider them as UNTREATED? ...
written 3 months ago by bio9440
0
votes
1
answer
219
views
1
answers
Comment: C: How to know which samples are treated and untreated?
... Sure. Thanks very much ...
written 3 months ago by bio9440
0
votes
1
answer
219
views
1
answers
Comment: C: How to know which samples are treated and untreated?
... Sure, I'll have a look at that. Yes! I almost forgot that I included #. My mistake. ...
written 3 months ago by bio9440
5
votes
1
answer
219
views
5 follow
1
answer
How to know which samples are treated and untreated?
... I am currently working on this colorectal cancer dataset GSE14333 and I was wondering as to how do I know which samples in this dataset are treated and untreated? head(GSE14333_PHENO) X Location DukesStage Age Gender DFSTime DFS_group DFSCens AdjXRT AdjCTX 1 GSM358387 Rectum ...
untreated colorectalcancer treated written 3 months ago by bio9440 • updated 3 months ago by Santosh Anand4.0k
0
votes
1
answer
187
views
1
answers
Comment: C: Mapping probe id's to gene symbols
... Thanks very much Emily ...
written 3 months ago by bio9440
1
vote
1
answer
512
views
1
answers
Comment: C: Annotate Affymetrix probesets to Gene symbols
... Thanks again, Kevin. Appreciate it. ...
written 3 months ago by bio9440
4
votes
1
answer
187
views
1
answer
Mapping probe id's to gene symbols
... Hello everyone, I was wondering as to how do I map the probe id's to the gene symbols so that they are in the same order. I just noticed that my annotLookup table probe id's are in a different order when compared to the original dataset. > rownames(exprs(gset))[1:10] [1] "1007_s_at" "10 ...
genesymbols annotate biomart mapping probeid written 3 months ago by bio9440 • updated 3 months ago by Emily_Ensembl16k

Latest awards to bio94

No awards yet. Soon to come :-)

Help
Access

Use of this site constitutes acceptance of our User Agreement and Privacy Policy.
Powered by Biostar version 2.3.0
Traffic: 942 users visited in the last hour