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Posts by michal.inbar
Comment: A: unidentified hg19 reference file
... thanks genomax and Alexander. we actually do have the original data, but it would take time to realign since we have many samples. samtools flagstat returned same results for data aligned with the suspicious reference and the UCSC reference. Isn't it enough to prove that the suspicious reference i ...
... Hi all, newbie question here: we have a hg19 reference file which is sorted in an unusual manner (see the order of contigs below). It was downloaded a few years ago, and we have no info as to its origin. we have 40 bam files already aligned to this reference (are also sorted in this manner). for ...
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