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0
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list all drugs for a specific indication in ChEMBL webpage or API
ChEMBL API
8 months ago by Zhilong Jia ★ 2.2k
1
vote
1
reply
654
views
open source webserver for multi-omics data store and descriptional visualization
webserver multi-omics open-source
updated 14 months ago by 4.5k • written 15 months ago by ★ 2.2k
0
votes
0
replies
614
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Large difference of speeds for ngmlr mapping ONT data to hg38 and hg19
time ngmlr hg38 hg19 ONT
2.4 years ago by Zhilong Jia ★ 2.2k
0
votes
0
replies
524
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How to make statistic tests for the RNA-Seq, proteomic, clinical data
RNA-Seq statistics proteomics
2.5 years ago by Zhilong Jia ★ 2.2k
4
votes
4
replies
1.1k
views
Will mapping Read 1 in Single Cell 3' sequencing increase mapping accuracy or not?
singlecell zUMI mapping 3`sequencing scruff
updated 3.1 years ago by 141k • written 3.1 years ago by ★ 2.2k
0
votes
1
reply
745
views
What is the difference between Structural variants and Structural Variation
Structural Variation Structural variants
updated 3.3 years ago by ★ 5.1k • written 3.3 years ago by ★ 2.2k
0
votes
0
replies
771
views
Tools to infer population structure and evolution from structural variation genotype data
structural variation population structure
updated 4.6 years ago by 20 • written 4.8 years ago by ★ 2.2k
2
votes
2
replies
1.8k
views
Visualize the two pathways sharing some common genes
website pathway visualization
updated 19 months ago by 43k • written 8.6 years ago by ★ 2.2k
2
votes
6
replies
5.6k
views
Database for Chemical and Physical Properties of drugs or compounds
chemoinformatics drug Database
updated 21 months ago by 43k • written 9.0 years ago by ★ 2.2k
4
votes
3
replies
5.8k
views
How to calculate connectivity score for a compound in connectivity map O2?
connectivity-map cmap connectivity-score
updated 14 months ago by 43k • written 9.0 years ago by ★ 2.2k
5
votes
6
replies
3.3k
views
get the snp sequence from dbSNP programally
SNP dbSNP
updated 2.2 years ago by 43k • written 9.4 years ago by ★ 2.2k
11
votes
3
replies
6.9k
views
pathway analysis tools and KEGG gene sets from MSigDB
pathway analysis KEGG MSigDB
updated 21 months ago by 43k • written 9.0 years ago by ★ 2.2k
4
votes
4
replies
4.2k
views
in R package rcdk, to get the descriptor of some chemicals, eval.desc error when tackling some descriptor, such as BasicGroupCountDescriptor
eval.desc rcdk
updated 2.6 years ago by 43k • written 10.0 years ago by ★ 2.2k
2
votes
1
reply
1.3k
views
what is the naming rule of ArrayExpress accession
arrayExpress
updated 6.0 years ago by ★ 1.9k • written 6.0 years ago by ★ 2.2k
0
votes
0
replies
1.7k
views
why are the intensities different for two different genes with the same color bead in lincs L1000 data
lincs L1000 Luminex
6.2 years ago by Zhilong Jia ★ 2.2k
30
votes
14
replies
26k
views
7 follow
how to plot multi pheatmap into one figure
pheatmap plotting par
updated 21 months ago by ▴ 80 • written 9.3 years ago by ★ 2.2k
3
votes
9
replies
2.1k
views
what should be taken care of during the bioinformatic analysis for targeted resequencing, compared with whole genome resequencing?
sequencing targeted resequencing wgs
updated 6.6 years ago by 16k • written 6.7 years ago by ★ 2.2k
0
votes
0
replies
1.3k
views
What should be noted if analyzing the combination of lab-producing RNA-Seq data and open RNA-Seq data in GEO
rna-seq
7.1 years ago by Zhilong Jia ★ 2.2k
5
votes
3
replies
2.8k
views
In R, how to map gds ids to gse ids
GDS GEO GSE
updated 2.0 years ago by 43k • written 9.2 years ago by ★ 2.2k
3
votes
5
replies
44k
views
how to set the size of cell of heatmap.2 in R
heatmap.2 R
updated 2.2 years ago by 43k • written 9.4 years ago by ★ 2.2k
2
votes
1
reply
2.4k
views
Filtering samples or not before normalisation for samples from several groups
gene-expression filter microarray normalisation
updated 21 months ago by 43k • written 8.3 years ago by ★ 2.2k
2
votes
6
replies
6.7k
views
Position Frequency Matrix to Position Weight Matrix, whose colsums need to be 1.
bioconductor motif PFM R PWM
updated 2.1 years ago by 43k • written 9.4 years ago by ★ 2.2k
2
votes
7
replies
2.5k
views
which structure should be used for a drug (like fluvastatin) in chemoinformatics
chemistry chemoinformatics drug
updated 16 months ago by 43k • written 8.8 years ago by ★ 2.2k
0
votes
2
replies
2.7k
views
what does lowess smoothed line show in a MA plot
lowess microarry maplot
updated 19 months ago by 43k • written 8.7 years ago by ★ 2.2k
3
votes
5
replies
1.4k
views
To compare a set of genes is different from all the genes, which test should be used.
statistics
updated 16 months ago by 43k • written 8.8 years ago by ★ 2.2k
2
votes
2
replies
2.1k
views
what is applications of gene ranking except GSEA?
gene ranking GSEA
updated 14 months ago by 43k • written 9.0 years ago by ★ 2.2k
1
vote
5
replies
2.8k
views
How to get z-score without centering the data points
scale z-score
updated 22 months ago by 43k • written 9.0 years ago by ★ 2.2k
1
vote
1
reply
1.6k
views
methods to remove variation of individuals in high-throughput experiments
microarray RNA-seq
updated 22 months ago by 43k • written 9.1 years ago by ★ 2.2k
0
votes
3
replies
2.0k
views
How to conveniently get the sequence of probes from the GPL annotation Data table in GEO
annotation GEO GPL
updated 23 months ago by 43k • written 9.1 years ago by ★ 2.2k
6
votes
17
replies
13k
views
in R, how to get the gene symbols of GPL
GPL GEO gene-symbol
updated 2.0 years ago by 43k • written 9.2 years ago by ★ 2.2k
0
votes
6
replies
3.0k
views
toosl to find motifs which are snp-specific
motif SNP
updated 2.1 years ago by 43k • written 9.4 years ago by ★ 2.2k
0
votes
1
reply
2.3k
views
mapping genbank accession to gene SYMBOL for GPL5447
microarray R gene-names
updated 2.2 years ago by 43k • written 9.4 years ago by ★ 2.2k
1
vote
2
replies
2.5k
views
get the Therapeutic Uses and Pharmacology and Biochemistry for some CIDs from pubchem in R or python.
cheminformatics pubchem R
updated 2.2 years ago by 43k • written 9.4 years ago by ★ 2.2k
0
votes
4
replies
1.7k
views
get the information of compound via WSDL in ChemBank Database
WSDL chembank
updated 2.2 years ago by 43k • written 9.4 years ago by ★ 2.2k
2
votes
11
replies
6.0k
views
Is there a file about relationship between the cmap name In connectivity map and compound structure (maybe PubChem ID or Drugbank ID)
drugbank cmap pubchem
updated 2.2 years ago by 43k • written 10.0 years ago by ★ 2.2k
1
vote
0
replies
4.7k
views
The range of enrichment score and Normalized Enrichment Score in gene set enrichment analysis software
pathwayanalysis GSEA
updated 3.1 years ago by 43k • written 9.5 years ago by ★ 2.2k
8
votes
3
replies
4.6k
views
What Is The Gene'S Correlation With Phenotype In Detail Using The Gsea
correlation gene-expression
updated 10.5 years ago by 26k • written 10.5 years ago by ★ 2.2k
0
votes
5
replies
2.1k
views
Where Do I Download The Protein Abundance Dataset Of B. Subtilis
protein
updated 11.1 years ago by ▴ 20 • written 11.9 years ago by ★ 2.2k
8
votes
2
replies
5.0k
views
How To Generate Bed File Only Containing The Cds Region ?
cds bed ucsc
updated 11.1 years ago by 11k • written 11.1 years ago by ★ 2.2k
10
votes
12
replies
4.3k
views
Why Are Almost All Protein Or Mrna Abundance Measures Transformed By Log?
protein mrna statistics normalization
updated 11.9 years ago by ★ 2.9k • written 11.9 years ago by ★ 2.2k
1
vote
3
replies
1.8k
views
What'S The Viewlimits'S Mean In Wig Format File Of Sequencing Data
rna-seq wiggle
updated 11.9 years ago by 24k • written 11.9 years ago by ★ 2.2k
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