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Showing :
questions
2
votes
6
replies
997
views
Illumina reads clipped at the expected Cas9 double-strand break site – how to interpret?
illumina
cas9
sequencing
crispr
miseq
updated 21 months ago by
GenoMax
140k • written 21 months ago by
francois
▴ 80
7
votes
4
replies
861
views
How to extract variants falling in a genomic window from a VCF?
vcf
updated 2.8 years ago by
GenoMax
140k • written 2.8 years ago by
francois
▴ 80
0
votes
5
replies
839
views
How can I drop the MAPQ info of my sam/bam file?
bam
updated 2.8 years ago by
Carlo Yague
8.6k • written 2.8 years ago by
francois
▴ 80
2
votes
4
replies
1.1k
views
Rsamtools: get nucleotide of read ID X at position P
rsamtools
2.8 years ago by
francois
▴ 80
4
votes
1
reply
868
views
How to trim alignments in a BAM file to a restricted genomic window?
bam
alignment
updated 2.9 years ago by
Pierre Lindenbaum
160k • written 2.9 years ago by
francois
▴ 80
8
votes
16
replies
4.3k
views
bedtools bamtofastq generates fastq which cannot be gzip correctly?
gzip
miseq
bedtools
fastq
bamtofastq
updated 3.0 years ago by
Istvan Albert
100k • written 3.0 years ago by
francois
▴ 80
0
votes
2
replies
1.4k
views
Why does samtools calmd change the NM tag when generating the MD tag?
sequencing
3.7 years ago by
francois
▴ 80
3
votes
2
replies
1.2k
views
How to report coverage at overlapping regions of paired-end reads?
illumina
paired-end
updated 4.2 years ago by
h.mon
35k • written 4.2 years ago by
francois
▴ 80
6
votes
5
replies
3.3k
views
biomaRt: Cannot access the zebra fish dataset
biomart
r
updated 4.5 years ago by
fatimarasool135
▴ 90 • written 6.3 years ago by
francois
▴ 80
0
votes
2
replies
1.5k
views
No reads in IGV at the positions indicated by the bed file
sequencing
4.8 years ago by
francois
▴ 80
2
votes
8
replies
1.2k
views
RNAseq: What's the accurate way to test whether a set of N genes is differentially expressed?
RNA-Seq
updated 5.0 years ago by
Devon Ryan
104k • written 5.0 years ago by
francois
▴ 80
2
votes
2
replies
757
views
Can I conclude anything from MiSeq primer reads?
sequencing
updated 5.0 years ago by
Friederike
8.9k • written 5.0 years ago by
francois
▴ 80
2
votes
8
replies
1.5k
views
How to predict non-sense mediated decay from Illumina reads?
sequencing
5.0 years ago by
francois
▴ 80
6
votes
3
replies
3.6k
views
Why do I have more reads in my .bam file than in my .fastq input file?
alignment
bam
fastq
updated 5.7 years ago by
Pierre Lindenbaum
160k • written 5.7 years ago by
francois
▴ 80
0
votes
2
replies
1.5k
views
Can IGV tell me where to look?
igv
nanopore
minion
5.7 years ago by
francois
▴ 80
3
votes
6
replies
1.8k
views
IGV not highlighting possible variants
igv
updated 5.8 years ago by
GenoMax
140k • written 5.8 years ago by
francois
▴ 80
6
votes
7
replies
3.7k
views
Where are my reads in IGV?
igv
alignment
5.8 years ago by
francois
▴ 80
6
votes
11
replies
5.1k
views
"Invalid BAM file header: missing sequence name in file" when trying to visualise .bam file in IGV
alignment
bam
igv
updated 5.8 years ago by
WouterDeCoster
47k • written 5.8 years ago by
francois
▴ 80
6
votes
4
replies
1.3k
views
Why GWASs cannot speculate what kind of mutation the SNP would cause?
gwas
SNP
updated 6.1 years ago by
Noushin N
▴ 600 • written 6.1 years ago by
francois
▴ 80
0
votes
5
replies
3.0k
views
R: How to loop to extract all sequences within specific positions?
R
sequence
updated 6.6 years ago by
megha.lal
• 0 • written 7.3 years ago by
francois
▴ 80
0
votes
0
replies
1.0k
views
How should I use year dates in GDAC clinical data?
tcga
cancer
6.8 years ago by
francois
▴ 80
4
votes
6
replies
5.1k
views
With Python, how can I solve this restriction mapping problem?
python
restriction
7.1 years ago by
francois
▴ 80
2
votes
3
replies
2.0k
views
R: How to correctly compute p-value of a k-mer?
R
genome
motif
updated 7.3 years ago by
Steven Lakin
★ 1.8k • written 7.3 years ago by
francois
▴ 80
23 results • Page
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