User: buchfink

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buchfink80
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Posts by buchfink

<prev • 7 results • page 1 of 1 • next >
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Comment: C: Long read alignment for MEGAN6
... Regarding your first question, I can't help you with that, please ask at the MEGAN community website (http://megan.informatik.uni-tuebingen.de/). DIAMOND does support long read alignment now, it has recently been implemented. ...
written 5 days ago by buchfink80
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Answer: A: Long read alignment for MEGAN6
... You can use DIAMOND (https://github.com/bbuchfink/diamond) for long read alignment. It now also supports frameshift alignments. Use the options -F 15 --range-culling. ...
written 8 days ago by buchfink80
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Comment: C: Blast duration time (+500 000 seqs)
... DIAMOND can do protein-protein alignment too, and it's much faster than BLAST. You should give it a try. ...
written 13 months ago by buchfink80
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Answer: A: diamond blastx always return error message "Insufficient arguments. Use diamond
... Hi, the problem is that you're using a very old version of diamond which had a different syntax, and could only generate DAA files. I recommend upgrading to the latest version. ...
written 17 months ago by buchfink80
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Answer: A: All vs. all pairwise sequence aligment
... You can try the DIAMOND aligner: https://github.com/bbuchfink/diamond ...
written 17 months ago by buchfink80
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Answer: A: Diamond sequence description
... You can use this command line option for showing the full subject title (more details are in the manual): `-f 6 qseqid stitle pident length mismatch gapopen qstart qend sstart send evalue bitscore` ...
written 17 months ago by buchfink80
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Answer: A: LAST/Poretools - where to start?
... You can try diamond (https://github.com/bbuchfink/diamond), it's a protein aligner similar to LAST but it has a native Windows version that does not require cygwin. ...
written 18 months ago by buchfink80

Latest awards to buchfink

Scholar 8 days ago, created an answer that has been accepted. For A: Long read alignment for MEGAN6

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