User: nilaylale88

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Posts by nilaylale88

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Comment: C: Pymol selected residue have dots that are not part of the residue
... Problem solved. Upon further investigation, apparently we did not show the main chain, only showed the side chain. Those dots that show up with no line are the main chain. If we show all the main and side chains, then all is good. Thank you all for your comments. ...
written 29 days ago by nilaylale880
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Comment: C: Pymol selected residue have dots that are not part of the residue
... Thanks for the reply, yeah I have checked the PDB file and apparently number of dots are same as the atoms that residue. I changed the representation for sticks, and it seems the same. As i understand from the PDB file and comparing with various selections, it seems like those dots that goes beyond ...
written 29 days ago by nilaylale880
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Pymol selected residue have dots that are not part of the residue
... Hello guys, I am working on pymol recently and there is one thing i dont understand. When i select a residue on the sequence tab i see on the visualisation window that it picks it as some dots are rounding the residue, however there are some dots that appear beyond my residue. Is there anyone who c ...
pymol written 4 weeks ago by nilaylale880
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Comment: C: Extract V3-V4 regions from 16s sequences
... Hello what are the primers you used, im getting an empty file? can you enlighten me please? ...
written 7 months ago by nilaylale880
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Comment: C: Gettin Consensus From Multiple Whole Genomes
... Sorry, fresh graduate here. Thanks for quick reply. There are 15 microRNA sequences from rats which are given heroin and another 15 microRNA sequences that are control group. What i was told is, assemble those and get a consensus from each group. After that compare those 2 consensus and do the annot ...
written 3.5 years ago by nilaylale880
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Gettin Consensus From Multiple Whole Genomes
... Hello guys, newbie here. - I have 15 microRNA sequences from rats. I used Velvet and SSPACE to assemble the genomes. Assembeled genomes are 8-9 Mbp, what i am targeting is apply MSA and get consensus within these 15 genomes and then do the genome annotation on that consensus seq. I tried, Clustalx, ...
multiple sequence alignment whole genome alignment written 3.5 years ago by nilaylale880 • updated 3.4 years ago by Biostar ♦♦ 20

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