User: mausamkumravat

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Posts by mausamkumravat

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How to calculate Mutation Frequency for each Gene using TCGA SNV data?
... Hi, I've downloaded SNV data (.maf file) for TCGA-SKCM. There is no column in data for mutation frequency. Now, for each gene I've to calculate mutation frequency. How can I do that? Someone please suggest any approach to calculate Mutation Frequency for each gene using TCGA SNV data. Thanks! ...
gene tcga snv mutation frequency written 6 months ago by mausamkumravat0 • updated 6 months ago by Kevin Blighe46k
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Hi What are the ways to combined different HSP hits from BLASTX to obtain much more continuous alignment representation for the target region against the subject?
... Hi What are the ways to combined different HSP hits from BLASTX to obtain much more continuous alignment representation for the target region against the subject? ...
blast written 2.6 years ago by mausamkumravat0
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Hi I want to parse the BLASTX result which is in -outfmt 6 saved in a ms excel file on the basis of pident >= 70% and E-value (10 e-2) with the help of perl script. How can I do?
... Hi I want to parse the BLASTX result which is in the -outfmt 6 tabular format saved in a ms excel file and I want to filter the result on the basis of pident >= 70% and E-value (10 e-2) with the help of perl script. How can I do this? ...
blast written 2.6 years ago by mausamkumravat0

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