User: Payal

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Payal20
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7 months, 2 weeks ago
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Posts by Payal

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Kraken Database Installation Problem
... Hi, I am trying to install and run Kraken for a metagenomics project. I have installed Kraken, however it requires a dependent database to be built as well. I am trying to build the database following their manual, where I am supposed to run: **kraken-build --standard --db dir/dbname** However I ...
metagenomics written 6 days ago by Payal20
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Answer: A: HISAT2 or Tophat2
... Thank you for all your suggestions. ...
written 7 months ago by Payal20
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HISAT2 or Tophat2
... Hi I am new to rna seq..I would like to know which one of Tophat2 and Hisat2 is the better aligner for rna-seq data? Or is there an even better option? ...
alignment rna-seq written 7 months ago by Payal20 • updated 7 months ago by Charles Warden4.8k
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Answer: A: How to download raw sequence data from GEO/SRA
... Addition:(Further Downstream RNA-Seq Analysis using GALAXY) In case anybody wants to get files from SRA directly into GALAXY for further analysis, please check out this other video too, https://www.biostars.org/p/117518/. It explains how to get data from SRA directly into GALAXY using Tools in GALA ...
written 7 months ago by Payal20

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