User: justinms

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justinms10
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4 months, 3 weeks ago
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3 years, 4 months ago
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j*******@outlook.com

Posts by justinms

<prev • 15 results • page 1 of 2 • next >
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conversion of genomic variant to coding variant to protein variant
... Let's say I have some protein variant (M345V) and I want to quickly find out the coding variant by providing just the amino acid change and sequence. Is there a free online tool to accomplish this? What about going all the way back to locating the genomic coordinates? Then to finding its coding and ...
coordinates variant snp conversion written 5 months ago by justinms10
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Comment: C: Lost keyboard access after biolinux 8 boot
... I agree BioLinux does seem outdated, my next attempt was dowloading Ubuntu on a USB drive. Still ran into the problem of the keyboard not working. It seems to be a common occurrence with Surface Laptops. Still trying to solve this problem, however. ...
written 10 months ago by justinms10
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(Closed) Lost keyboard access after biolinux 8 boot
... I recently installed BioLinux 8 which is based upon the Ubuntu 14.04 desktop release. I've gotten BioLinux to boot from my USB drive. However, after the intial start up screen, when the desktop environment is shown, I can no longer use my keyboard or my track pad. Could someone interpret what may b ...
biolinux linux ubuntu keyboard written 10 months ago by justinms10 • updated 10 months ago by MLXOOO10
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Comment: C: Detecting Homozygous Insertion from Sanger Seq
... Correct. But this is a homozygous insertion and there would only be one peak at this site. I need to confirm that both alleles have the insertion ...
written 22 months ago by justinms10
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Detecting Homozygous Insertion from Sanger Seq
... I have a patient with a homozygous insertion, although I can detect the presence of the insertion using the software that I have, it is not so clear as to whether or not the individual is homozygous for this insertion. Is there any way this can be detected using sanger data? ...
indel sanger written 22 months ago by justinms10 • updated 22 months ago by trausch1.5k
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Modeling Transcription Factor-DNA binding
... I know there are probabilistic models used to determine whether or not a Transcription factor will bind a given DNA sequence but I would like to know given a particular protein sequence the strength or the binding affinity to which it binds its consensus sequence. Are there any algorithms or program ...
transcription factor probabilistic models written 22 months ago by justinms10
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Comment: C: Bioinformatics and Functional Genomics - Jonathan Pevsner
... Well I recently reached Chapter3 in his book on pair wise alignment of sequences and he goes on to explain the several steps of creating Margaret Dayhoff PAM matrices. I try to use his formulas to reconstruct the matrices and I just seem to get lost every time. He doesn't necessarily go into the mat ...
written 22 months ago by justinms10
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Bioinformatics and Functional Genomics - Jonathan Pevsner
... I have recently started this book "Bioinformatics and Functional Genomics" by Jonathan Pevsner which has really inspired myself to dive deeper into bioinformatics and become more familiar with the subject. However, my background is in biology not computational sciences although I have worked in a ge ...
math jonathan pevsner pevsner genomics written 22 months ago by justinms10 • updated 20 months ago by Biostar ♦♦ 20
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Comment: C: Genome Browser and Custom Tracks
... This looks nice actually, how exactly did you extract that information from ExAC? ...
written 3.3 years ago by justinms10
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Genome Browser and Custom Tracks
... Bio Guys, Does anyone know how to display variant information on the genome browser that displays variant frequency as one would visualize in a lolliplot or manhattan plot? ...
genome browser custom track written 3.3 years ago by justinms10

Latest awards to justinms

Popular Question 10 months ago, created a question with more than 1,000 views. For Visualize Mutation Frequency
Popular Question 22 months ago, created a question with more than 1,000 views. For Visualize Mutation Frequency

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