User: sktbanerjee1

gravatar for sktbanerjee1
Reputation:
0
Status:
New User
Last seen:
1 day, 17 hours ago
Joined:
2 months, 2 weeks ago
Email:
s***********@gmail.com

Profile information, website and location are not shown for new users.

This helps us discourage the inappropriate use of our site.

Posts by sktbanerjee1

<prev • 5 results • page 1 of 1 • next >
0
votes
1
answer
86
views
1
answers
Comment: C: Obtaining read group information from the Fastq file
... Thanks a lot for your replies. ...
written 3 days ago by sktbanerjee10
0
votes
1
answer
86
views
1
answers
Comment: C: Obtaining read group information from the Fastq file
... Thanks, for the help. I was wondering if including the read group information in the bwa-mem step would fix this? If, Yes, then how to find out the read group information. ...
written 10 days ago by sktbanerjee10
1
vote
1
answer
81
views
1
answer
Is it necessery to perform GATK-BQSR before performing variant calling using freebayes.
... I am trying to call variants from whole exome paired end sequences aligned to HG38p7 using the Freebayes variant caller. As it is a general recommendation to perform BQSR before any type of variant calling, I was wondering is it necessary to perform the BQSR before calling variants with freebayes? ...
gatk bqsr freebayes written 10 days ago by sktbanerjee10 • updated 9 days ago by finswimmer7780
0
votes
1
answer
86
views
1
answers
Comment: A: Obtaining read group information from the Fastq file
... Actually, after QC I have aligned them using BWA-MEM. now I am to call variants using GATK haplotype caller, but before that I am to re calibrate the base quality scores using GATK BQSR. when I try to perform that task, I get an error "ERROR: ReadGroup information in the BAM header is not present". ...
written 10 days ago by sktbanerjee10
1
vote
1
answer
86
views
1
answer
Obtaining read group information from the Fastq file
... Hello everyone, I am new in the field of computational biology and I am working with few paired end fastq files with the aim of prioritizing genomic variants but I am finding it very hard to understand how to get the read group information from the fastq header. here are two fastqc headers of pair ...
fastq readgroup written 10 days ago by sktbanerjee10

Latest awards to sktbanerjee1

No awards yet. Soon to come :-)

Help
Access

Use of this site constitutes acceptance of our User Agreement and Privacy Policy.
Powered by Biostar version 2.3.0
Traffic: 694 users visited in the last hour