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Showing :
questions
0
votes
4
replies
882
views
Between sample normalization without replicates
normalization
RNA-Seq
13 months ago by
GR
▴ 400
0
votes
1
reply
479
views
Extract species-specific SNPs from VCF files
vcf
SNPs
updated 10 months ago by
Ram
43k • written 14 months ago by
GR
▴ 400
0
votes
1
reply
477
views
How to confirm species for seed material provided
genotyping
updated 15 months ago by
Matthias Zepper
4.5k • written 15 months ago by
GR
▴ 400
5
votes
2
replies
633
views
30 bp sequence that does not show hit within a genome
similarity
updated 15 months ago by
shenwei356
8.4k • written 15 months ago by
GR
▴ 400
1
vote
3
replies
745
views
Extracting all the genes without introns for a species
introns
updated 18 months ago by
Juke34
8.5k • written 18 months ago by
GR
▴ 400
0
votes
2
replies
1.3k
views
adapter trimming using trimmomatic
adapter-trimming
next-gen-sequencing
updated 21 months ago by
Ram
43k • written 4.0 years ago by
GR
▴ 400
1
vote
3
replies
1.4k
views
Add Strand tag to hisat2 alignments
rna
hisat2
updated 3.1 years ago by
Istvan Albert
100k • written 3.1 years ago by
GR
▴ 400
2
votes
3
replies
1.6k
views
Conversion to vcf format for quality filtered SNPs
population-data
VCF
updated 2.4 years ago by
Ram
43k • written 9.8 years ago by
GR
▴ 400
0
votes
2
replies
648
views
Adapter sequences for stranded paired end data
RNA-Seq
adapter sequences
updated 3.4 years ago by
swbarnes2
14k • written 3.4 years ago by
GR
▴ 400
0
votes
0
replies
983
views
ChIPQC cross-coverage plot
ChIP-Seq
cross-coverage
Chipqc
4.0 years ago by
GR
▴ 400
7
votes
10
replies
6.2k
views
Mapping paired end and single end reads together
mapping
updated 2.0 years ago by
Ram
43k • written 9.2 years ago by
GR
▴ 400
2
votes
1
reply
2.1k
views
Can We Expect To See A Genomic Region From Different Accession Unaligned?
multiple
genomics
updated 4.5 years ago by
Biostar
20 • written 12.1 years ago by
GR
▴ 400
0
votes
3
replies
647
views
expression evidence for overlapping genes
RNA-Seq
4.9 years ago by
GR
▴ 400
1
vote
2
replies
3.2k
views
Tools for genome-wide population genetics analysis
DNDS
PNPS
population-genetics
updated 2.1 years ago by
Ram
43k • written 9.6 years ago by
GR
▴ 400
0
votes
2
replies
1.9k
views
calculating dn/ds from codeml output
codeml
5.9 years ago by
GR
▴ 400
1
vote
3
replies
2.3k
views
Ribosomal Profiling Dataset For Analyzing Whether The Gene Is Translating Or Not
translation
updated 5.9 years ago by
Biostar
20 • written 11.7 years ago by
GR
▴ 400
9
votes
10
replies
9.0k
views
How To Correctly Classify Gene Families?
selection
classification
updated 6.1 years ago by
rajdeepjaswal52
• 0 • written 11.7 years ago by
GR
▴ 400
0
votes
1
reply
1.4k
views
Data mining for 300 genes from GEO
geo
updated 6.1 years ago by
Biostar
20 • written 6.9 years ago by
GR
▴ 400
8
votes
7
replies
6.9k
views
Select top differentially expressed genes based on both p-value and fold-change
RNA-Seq
differential-expression
DESeq2
updated 7.0 years ago by
Santosh Anand
5.7k • written 7.0 years ago by
GR
▴ 400
0
votes
2
replies
3.4k
views
meme-suite: How does FIMO works?
meme-suite
motif identification
FIMO
updated 7.0 years ago by
Santosh Anand
5.7k • written 7.1 years ago by
GR
▴ 400
0
votes
1
reply
2.6k
views
macs2 warnings unknown sequencing problem
chipseq
single end data
macs2
7.0 years ago by
GR
▴ 400
1
vote
2
replies
1.7k
views
pybedtools change fasta headers
pybedtools
python
7.1 years ago by
GR
▴ 400
15
votes
8
replies
12k
views
How to extract all the mapped reads from bwa output
bwa
fastq
mapping
updated 2.1 years ago by
Ram
43k • written 9.2 years ago by
GR
▴ 400
0
votes
3
replies
3.2k
views
Chip-seq on pooled replicates
ChIP-Seq
pooled replicates
updated 7.2 years ago by
EagleEye
7.5k • written 7.2 years ago by
GR
▴ 400
0
votes
2
replies
2.3k
views
Macs2 failed for pooled samples
ChIP-Seq
macs2
updated 7.2 years ago by
EagleEye
7.5k • written 7.2 years ago by
GR
▴ 400
3
votes
1
reply
1.3k
views
samtools flag 1548
samtools
Bitwise Flags
updated 7.2 years ago by
Pierre Lindenbaum
161k • written 7.2 years ago by
GR
▴ 400
0
votes
2
replies
1.7k
views
Literature mining based on gene annotation
data-mining
annotations
updated 7.3 years ago by
natasha.sernova
★ 4.0k • written 7.3 years ago by
GR
▴ 400
2
votes
2
replies
3.0k
views
Implementing McDonald-Kreitman test
population-genetics
Mcdonald-Krietman test
updated 7.4 years ago by
mt1022
▴ 310 • written 9.8 years ago by
GR
▴ 400
0
votes
2
replies
1.5k
views
Identification of network root and building parent child relationship
gene networks
python
networkx
7.8 years ago by
GR
▴ 400
1
vote
4
replies
3.3k
views
Gene id to gene name mapping
gene id
gene name
7.8 years ago by
GR
▴ 400
2
votes
2
replies
2.5k
views
How to calculate FPKM from the reads mapped to two genomes
FPKM
RNA-seq
allele-specific-expression
updated 17 months ago by
Ram
43k • written 8.8 years ago by
GR
▴ 400
6
votes
6
replies
5.2k
views
Using ML tree or bootstrapped tree
phylogenetics
updated 16 months ago by
Ram
43k • written 8.8 years ago by
GR
▴ 400
0
votes
2
replies
1.5k
views
translate position in cds to position in nucleotide sequence
sequence
translate
updated 15 months ago by
Ram
43k • written 8.9 years ago by
GR
▴ 400
3
votes
2
replies
2.2k
views
Constructing the ancestral state of amino acid
paml
codeml
updated 15 months ago by
Ram
43k • written 9.0 years ago by
GR
▴ 400
0
votes
1
reply
2.4k
views
Tool for removing bad quality sequences from MSA
multiple-sequence-alignment
updated 22 months ago by
Ram
43k • written 9.0 years ago by
GR
▴ 400
3
votes
3
replies
2.3k
views
How to extract meaningful information from FPKM of a subset of genes
Phylogeny
FPKM
RNA-Seq
updated 2.0 years ago by
Ram
43k • written 9.2 years ago by
GR
▴ 400
0
votes
5
replies
4.1k
views
Draw heatmaps for large dataset 2000x40
Heatmap
R
updated 2.0 years ago by
Ram
43k • written 9.2 years ago by
GR
▴ 400
2
votes
2
replies
3.8k
views
Bam2Fastq paired-end output options
bam2fastq
updated 2.0 years ago by
Ram
43k • written 9.2 years ago by
GR
▴ 400
0
votes
6
replies
4.7k
views
Mapping coordinates from gff file to individual gene
mapping gene corrdinates
updated 2.1 years ago by
Ram
43k • written 9.3 years ago by
GR
▴ 400
0
votes
1
reply
2.9k
views
loss of function prediction
snpeff
disrupted gene models
updated 9.3 years ago by
Devon Ryan
104k • written 9.3 years ago by
GR
▴ 400
0
votes
5
replies
5.6k
views
plotting FPKM in R
RNA-Seq
R-graphs
updated 2.3 years ago by
Ram
43k • written 9.6 years ago by
GR
▴ 400
4
votes
3
replies
1.9k
views
SEQIO fetching the record Id
Biopython
fastq
updated 2.3 years ago by
Ram
43k • written 9.6 years ago by
GR
▴ 400
1
vote
9
replies
2.6k
views
Looking for transcription evidence in pooled-tissue RNA-seq data
transcription-evidence
RNA-Seq
updated 2.3 years ago by
Ram
43k • written 9.6 years ago by
GR
▴ 400
14
votes
5
replies
11k
views
Limma Package For Differential Expression Between Control And Stress
limma
differential
updated 2.3 years ago by
Ram
43k • written 12.2 years ago by
GR
▴ 400
9
votes
6
replies
5.8k
views
tophat- paired end reads combined in one file
RNA-seq
tophat
updated 2.3 years ago by
Ram
43k • written 9.6 years ago by
GR
▴ 400
3
votes
4
replies
2.3k
views
Variant effect prediction on non-vcf format file
VCF
Variant-effect-prediction
updated 2.3 years ago by
Ram
43k • written 9.7 years ago by
GR
▴ 400
7
votes
3
replies
3.5k
views
Need Help With Circos
updated 9.9 years ago by
Charles Warden
8.2k • written 10.6 years ago by
GR
▴ 400
0
votes
0
replies
3.1k
views
Fixing Omega Values In Codeml
codeml
updated 9.9 years ago by
Biostar
20 • written 10.4 years ago by
GR
▴ 400
10
votes
7
replies
4.0k
views
6 follow
Clustering Method For Coexpressed Genes
clustering
gene
updated 9.9 years ago by
karl.stamm
4.1k • written 12.3 years ago by
GR
▴ 400
0
votes
0
replies
1.6k
views
Tool To Check Gene Structure Retention In Different Strains
10.0 years ago by
GR
▴ 400
75 results • Page
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