User: hassan giahi

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Posts by hassan giahi

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Comment: C: build a metabolic pathway by list of genes
... yes i have list of genes and i want to build a metabolic pathway of this genes. ...
written 14 months ago by hassan giahi0
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build a metabolic pathway by list of genes
... hello every one i have some question about gene pathway(network) builder tools . my question is : a) Which program or tools is suitable for metabolic pathway analysis of a list of genes in plant (not human)??is there any program do it ? b) is IPA (Ingenuity Pathway Analysis) take a list of gene ...
gene next-gen rna-seq written 14 months ago by hassan giahi0
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number of threads for cufflinks transcript assembly
... Hello everyone I'm using cufflinks to build a transcript.gtf file on ubuntu server. i used this command for building it : sudo ./cufflinks --max-bundle-length 10000000 -o /mnt/cuffliks_denovo/SRR500880/ -p 16 -g /mnt/Homo_sapiens.GRCh37.87.gtf -u /mnt/Maping_output/SRR500880/SRR500880Aligned.s ...
assembly rna-seq written 14 months ago by hassan giahi0 • updated 14 months ago by colindaven790
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Comment: C: meta analysis of result of RNA-Seq data analysis
... thank you for your answer my porpose in meta analysis is that : the application of one treatment material on breast cacer cell line is effective or not ??? and for this reason i want to do a meta analysis ...but i do not know that witch column of rna seq result data ( that analysed by CLC ) should ...
written 20 months ago by hassan giahi0
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meta analysis of result of RNA-Seq data analysis
... hi all i have a problem for meta analysis of RNA-Seq defferential expression data that generated by CLC Genomic Workbench . in the result of RNA-Seq data analysis i see a total gene read column and tree p-value column that is the result of baggerly , edge and t-test . now , my question is that Whic ...
meta analysis clc rna-seq total gene read written 20 months ago by hassan giahi0 • updated 19 months ago by Biostar ♦♦ 20
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meta analysis of p value data by metaseq package
... hello everyone i have problem in my meta analysis of differential expressn of rna seq data ... my differential expression data was generated by clc genomic workbench ( RNA-Seq data analysis ) and i want to do a meta analysis of them ... but how can i use metaseq package for doing a meta analysis o ...
R clc rna-seq written 20 months ago by hassan giahi0

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