User: anne.de.jong

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Posts by anne.de.jong

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Answer: A: GSEA for organisms with no GO terms?
... For bacteria classes of GO, KEGG, PFAM, COG, PFAM, SMART, Superfamily, KEYWORDS and OPERONS http://genome2d.molgenrug.nl/index.php/functional-analysis-go-ipr ...
written 13 days ago by anne.de.jong0
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Answer: A: GO Term enrichment prokaryotes
... GSEA for GO KEGG, InterPro, COG, PFAM, SMART, Superfamily, KEYWORDS and OPERONS can be done for all complete genomes of the NCBI here: http://genome2d.molgenrug.nl/index.php/functional-analysis-go-ipr ...
written 13 days ago by anne.de.jong0
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Answer: A: Operon Prediction With Gene Annotations?
... Here is also Operon information on 5000 bacterial genomes: http://genome2d.molgenrug.nl/ ...
written 13 days ago by anne.de.jong0
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Answer: A: How to identify TSS sites from bacterial RNA-Seq data?
... I used TSSer As input you need RNA-Seq from whole transcripts and 5-prime enriched ...
written 13 days ago by anne.de.jong0

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