User: Light

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Light20
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Last seen:
1 year, 3 months ago
Joined:
2 years, 2 months ago
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m*************@gmail.com

Posts by Light

<prev • 23 results • page 1 of 3 • next >
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Comment: C: SRA Data Selection Bias??
... OK. I think am started getting it. ...
written 15 months ago by Light20
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Comment: C: SRA Data Selection Bias??
... identification of differentially expressed genes between 5 vs 5 samples(infected and normal) and gene ontology and pathway enrichment study of it. ...
written 15 months ago by Light20
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Comment: C: SRA Data Selection Bias??
... was about to find DEGs and study GO...Thanks for the answers. ...
written 15 months ago by Light20
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SRA Data Selection Bias??
... Hi all If I select 10 SRA dataset from the same SRPxxxxx, from same lab, same cell line, with good reads ranging from 1.7 to 2.2MBases. will there be any bias? if there is how to avoid it? Thank you in advance ...
bias rna-seq data selection written 15 months ago by Light20 • updated 15 months ago by Michael Dondrup45k
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Comment: C: Extract Sequence From Fasta and remove some characters before printing
... Thanks for the help @st.ph.n. ...
written 16 months ago by Light20
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Comment: C: Extract Sequence From Fasta and remove some characters before printing
... working on it now..Thanks ...
written 16 months ago by Light20
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Comment: C: Extract Sequence From Fasta and remove some characters before printing
... trim_length = int(lengthdict[accession_ID] Trim_length will hold accession id?? not understanding it. ...
written 16 months ago by Light20
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Comment: C: Parse large Fasta file and trim seq and print it.
... from Bio import SeqIO from Bio import Seq f1 = open('fasta_pruned.fasta','w') lengthdict = dict() with open("seqid_len.txt") as seqlengths: for line in seqlengths: split_IDlength = line.strip().split(' ') lengthdict[split_IDlength[0]] =int( spl ...
written 16 months ago by Light20
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Comment: C: Parse large Fasta file and trim seq and print it.
... Sorry about that. I will keep it in mind. ...
written 16 months ago by Light20
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Comment: C: Parse large Fasta file and trim seq and print it.
... Ok, will look at it. ...
written 16 months ago by Light20

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