Profile Posts Awards
Show
all questions tools blogs news tutorials forum answers comments
Showing : all
1
vote
0
replies
290
views
Comment: Comment: I am unsure why my files are not being accepted in bedtools jaccard, any tips?
16 days ago by John Marshall 3.0k
0
votes
0
replies
1.3k
views
Comment: Comment: sam format in the emboss water program
6 months ago by John Marshall 3.0k
0
votes
1
reply
1.3k
views
Comment: Comment: sam format in the emboss water program
6 months ago by John Marshall 3.0k
2
votes
1
reply
1.3k
views
Comment: Comment: sam format in the emboss water program
6 months ago by John Marshall 3.0k
0
votes
0
replies
1.4k
views
Comment: Comment: Read block operation failed with BAM file
6 months ago by John Marshall 3.0k
0
votes
0
replies
1.4k
views
Comment: Comment: Read block operation failed with BAM file
7 months ago by John Marshall 3.0k
2
votes
2
replies
1.4k
views
Answer: Answer: Read block operation failed with BAM file
7 months ago by John Marshall 3.0k
0
votes
0
replies
538
views
Answer: Answer: bcftools view -r issue
7 months ago by John Marshall 3.0k
2
votes
1
reply
1.9k
views
Answer: Answer: Using Bioconda with Mac M1 Processor?
8 months ago by John Marshall 3.0k
3
votes
0
replies
129k
views
Answer: Answer: from .BAM to .BAI using samtools
9 months ago by John Marshall 3.0k
2
votes
0
replies
1.3k
views
Comment: Comment: samtools install error
11 months ago by John Marshall 3.0k
3
votes
1
reply
1.3k
views
Answer: Answer: samtools install error
11 months ago by John Marshall 3.0k
0
votes
0
replies
2.5k
views
Comment: Comment: Tabix '[E::get_intv] Failed to parse TBX_VCF' error
20 months ago by John Marshall 3.0k
1
vote
0
replies
16k
views
Answer: Answer: How to efficiently remove a list of reads from BAM file?
20 months ago by John Marshall 3.0k
0
votes
0
replies
2.5k
views
Comment: Comment: Tabix '[E::get_intv] Failed to parse TBX_VCF' error
20 months ago by John Marshall 3.0k
3
votes
3
replies
2.5k
views
Answer: Answer: Tabix '[E::get_intv] Failed to parse TBX_VCF' error
21 months ago by John Marshall 3.0k
0
votes
1
reply
2.5k
views
Comment: Comment: Tabix '[E::get_intv] Failed to parse TBX_VCF' error
21 months ago by John Marshall 3.0k
2
votes
1
reply
2.5k
views
Comment: Comment: bwa 0.7.18 download to fix compile fail with GCC 10
23 months ago by John Marshall 3.0k
4
votes
2
replies
2.5k
views
Answer: Answer: bwa 0.7.18 download to fix compile fail with GCC 10
5 hours ago by John Marshall 3.0k
0
votes
0
replies
1.4k
views
Comment: Comment: Weird behavior of `--max-depth` argument from `bcftools mpileup` command when it
2.0 years ago by John Marshall 3.0k
4
votes
1
reply
2.9k
views
Answer: Answer: Is there equivalent of bgzip in Python?
2.1 years ago by John Marshall 3.0k
0
votes
0
replies
2.2k
views
Comment: Comment: I wonder if someone please explain what secondary, supplementary, duplicates and
2.1 years ago by John Marshall 3.0k
4
votes
2
replies
3.3k
views
Answer: Answer: Why piping a conda command into bash doesn't work ?
2.1 years ago by John Marshall 3.0k
2
votes
2
replies
1.2k
views
Comment: Comment: Convert SAM to BAM error
2.2 years ago by John Marshall 3.0k
4
votes
0
replies
1.2k
views
Answer: Answer: Convert SAM to BAM error
2.2 years ago by John Marshall 3.0k
3
votes
1
reply
917
views
Answer: Answer: Determine fragment alignment overlaps by parsing CIGAR string in the MC tag
2.3 years ago by John Marshall 3.0k
0
votes
1
reply
2.5k
views
Comment: Comment: samtools view not removing unwanted headers
2.4 years ago by John Marshall 3.0k
4
votes
2
replies
34k
views
Comment: Comment: bcftools: error while loading shared libraries: libcrypto.so.1.0.0: cannot open
2.5 years ago by John Marshall 3.0k
3
votes
0
replies
4.3k
views
Answer: Answer: building bcftools: curl/curl.h: No such file or directory
2.6 years ago by John Marshall 3.0k
3
votes
1
reply
1.4k
views
Answer: Answer: WHAT IS NA12878?
2.6 years ago by John Marshall 3.0k
0
votes
2
replies
2.0k
views
Comment: Comment: Exec format error in unmapped bam file
2.6 years ago by John Marshall 3.0k
0
votes
2
replies
2.0k
views
Answer: Answer: Exec format error in unmapped bam file
2.6 years ago by John Marshall 3.0k
0
votes
0
replies
2.2k
views
Answer: Answer: Fasta.fai file error
2.6 years ago by John Marshall 3.0k
1
vote
1
reply
2.2k
views
Comment: Comment: Fasta.fai file error
2.6 years ago by John Marshall 3.0k
1
vote
0
replies
2.2k
views
Comment: Comment: Fasta.fai file error
2.6 years ago by John Marshall 3.0k
1
vote
1
reply
1.7k
views
Answer: Answer: samtools returns error - cigar and query sequence are of different length even t
2.7 years ago by John Marshall 3.0k
2
votes
1
reply
9.2k
views
Comment: Comment: Dual index barcode demultiplex issue
2.7 years ago by John Marshall 3.0k
0
votes
0
replies
4.0k
views
Comment: Comment: Probable bug in bcftools while parsing headers
2.7 years ago by John Marshall 3.0k
6
votes
2
replies
34k
views
Answer: Answer: bcftools: error while loading shared libraries: libcrypto.so.1.0.0: cannot open
2.8 years ago by John Marshall 3.0k
6
votes
0
replies
1.9k
views
Answer: Answer: bcftools vcf2sex
3.1 years ago by John Marshall 3.0k
0
votes
0
replies
8.1k
views
Comment: C: samtools addreplacerg gives error
3.1 years ago by John Marshall 3.0k
5
votes
1
reply
3.2k
views
Answer: A: bcftools +fill-tag does not work in loop
3.1 years ago by John Marshall 3.0k
0
votes
1
reply
1.4k
views
Comment: C: Samtools Faidx Error Message
3.3 years ago by John Marshall 3.0k
0
votes
1
reply
1.4k
views
Comment: C: Samtools Faidx Error Message
3.3 years ago by John Marshall 3.0k
1
vote
1
reply
1.4k
views
Answer: A: Samtools Faidx Error Message
3.3 years ago by John Marshall 3.0k
0
votes
0
replies
3.2k
views
Comment: C: How to fix minimap2 -> samtools sort error (samtools sort: truncated file. Abort
3.3 years ago by John Marshall 3.0k
2
votes
0
replies
3.0k
views
Answer: A: How can I get the uncompressed size of a BGZIP file ?
3.4 years ago by John Marshall 3.0k
6
votes
1
reply
3.7k
views
Answer: A: How to filter out chromosome regions from a .bam file
3.4 years ago by John Marshall 3.0k
1
vote
0
replies
1.2k
views
Comment: C: Bcftools filter error
3.6 years ago by John Marshall 3.0k
3
votes
0
replies
3.1k
views
Answer: A: bedtools sort doesn't properly sort
3.6 years ago by John Marshall 3.0k
166 results • Page 1 of 4
Content Search
Users
Tags
Badges
Help About
FAQ
Access RSS
API
Stats

Use of this site constitutes acceptance of our User Agreement and Privacy Policy.

Powered by the version 2.3.6